Basic Information

Insect: Lacanobia wlatinum
Gene Symbol: -
Assembly: GCA_947578705.1
Location: OX388051.1:5249002-5271328[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.11 10 7.5 1.2 1 23 291 313 291 313 0.98

2 9 2.2 1.9e+02 3.5 0.1 1 23 320 342 320 342 0.91

3 9 1.6e-05 0.0014 19.6 1.5 2 23 375 397 375 397 0.97

4 9 3.8e-06 0.00033 21.6 0.3 1 23 406 428 406 428 0.98

5 9 0.00029 0.026 15.6 0.7 1 23 433 455 433 455 0.98

6 9 0.0051 0.45 11.7 0.2 1 21 466 486 466 491 0.94

7 9 2.4e-05 0.0021 19.1 0.5 1 23 513 536 513 536 0.98

8 9 2.8e-05 0.0024 18.9 1.3 1 23 542 564 542 564 0.98

9 9 0.00016 0.014 16.5 0.2 2 21 574 593 574 594 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.11	10	7.5	1.2	1	23	291	313	291	313	0.98
2	9	2.2	1.9e+02	3.5	0.1	1	23	320	342	320	342	0.91
3	9	1.6e-05	0.0014	19.6	1.5	2	23	375	397	375	397	0.97
4	9	3.8e-06	0.00033	21.6	0.3	1	23	406	428	406	428	0.98
5	9	0.00029	0.026	15.6	0.7	1	23	433	455	433	455	0.98
6	9	0.0051	0.45	11.7	0.2	1	21	466	486	466	491	0.94
7	9	2.4e-05	0.0021	19.1	0.5	1	23	513	536	513	536	0.98
8	9	2.8e-05	0.0024	18.9	1.3	1	23	542	564	542	564	0.98
9	9	0.00016	0.014	16.5	0.2	2	21	574	593	574	594	0.95

Sequence Information

Coding Sequence: ATGTCTTCATTCTTATGTTTTATTTGCCACAACACAGTGAACTCGGATACTCATGAGGAGACGCGAGACAAATACAGAGAAGTTGTGGGGATGAATCTATGTCCAGACTCGCATCTCTGCTACATTTGCTGCCATATGTTAAATAAACTTTGGCTTTTTAAATCTATATGTTTGAAAAGAAGTTTGGAATATCCGGTACTCTTTAGCGAAAAAGGATCTATTAACTTGCAACGAAACAAAATAGAAACAGTTATCATATGTTCTGAAGAAAACTGTCTACCGACGCACATATCACAACTATTTGTAGACAATAGAGATCACAGTATAAATAGTTATGATTACATAAAACTAGAAGAAAATCATAATGATATCGACGATTATTTCCGTGAAAATACAGCTAAGGAAATTGAAGTAACAGACATTGTGAATAATGATGAACAATTAGTGAACAATGATGAACAATTAGTGGAAAATAATGAACAGTTTGTGAATAATGATGAACAATTTGTGAATAATGATGCACAATTTGTGAATAATGATGAACAATTTGTAAATAACGATGTTCATCATTCTGATGATGATAACTTATTTGATTACGGATCAAGTAAAGATCAAGAAGATGATTTGGAGTCTAAAGTGGGAGATGTAGAAGAAAATGAAATAAATTATGAATATTATGAAGAGCAAAGAAATGAATGTTTGGATGAAATTAGAAATGAGTGCGGAAATGAAGAATCAGCTGGAGAACTTGATACAACAAAAAAGAAAAAATCTAAAAAGAAAGACTTTGAGAAGATTATTCTTTCAACAGAAGAGCAGAAGGCAGAGTTAGAAGCACAAAGAAAGAGTAAGAAGTATCTAGAAGCAGAGTTTAAGTGCTATAACTGTGCCTTAGGATTCCTGTTCAAAGATACTTATCAAGCACATATGATGCGGCATGAAGAGTCAAACGGCGAATACCTCTGCATGCTATGCTCCCTACGCTTCGCCACAGGCGGCGTGCTACGCTCACACGCTTCTCTCCACTCAGTACGCTATCGCTGCTGCCGATGCTCGCAGTACATTCGAGCTCGACAGACGCAGACGCATGCCAAATACTGTCATGATAAAGTGTCAGCTGCGACCTGTCATCTGTGTGGGCGGGTGTTTCAAGACGCAAGCGGGTTGCAGCAGCATCTGAAAAGGTTTCATATGTCCAAGGCCAGCAACAGAACATACTCCTGCAGTGTTTGTGGCAAGAGTTATAATAACCAAGCAGCTGTGAGGACGCATATGATAAAACACATCCACAGAAAATTCAGCTGCGACCAATGTCCCTCAATCTTCAGCAGTCCATACACACTGGCTCAACACAAAAAGAAGCATAATATAGAATCTACTGCTCCAATAAAGGAACACTACTGTACATCTTGTGGCGTCGGCTATGCCAGCAGAAAGAGTCTATTGGCGCACCAGAGACAAGCTGCCATCCACCAGGACAGAGTAAAGAGCTTATTGGCACACCAGAGACAAGCTGCCATCCACCAGGACAGAAAGTACGAATGCCCAATCTGCAACAGATCGTGCCCCAACGAGCGTTCGCTGTCCTCCCACATATCCACCGTTCACTCCTCGACGAAGCAGTTCCAATGCGACACGTGCAATGCGCGCTACAGCAGTCGCAAGTCGTTGACGAGACACGTGCGCGCGCATGTCGCGCCGCCGCCTGTCACGGTAGCCGTGTGCCAACTGTGTGGTGCTAGCTTTAAGGGAAGGAGTAAATTGAATCGTCATTTACGAGAAGTTTGTGAAAAGGATAAACTTGAAGAAGAATTGTCATCTTATTATGAACATCAACATGTTATTTAA
Protein Sequence: MSSFLCFICHNTVNSDTHEETRDKYREVVGMNLCPDSHLCYICCHMLNKLWLFKSICLKRSLEYPVLFSEKGSINLQRNKIETVIICSEENCLPTHISQLFVDNRDHSINSYDYIKLEENHNDIDDYFRENTAKEIEVTDIVNNDEQLVNNDEQLVENNEQFVNNDEQFVNNDAQFVNNDEQFVNNDVHHSDDDNLFDYGSSKDQEDDLESKVGDVEENEINYEYYEEQRNECLDEIRNECGNEESAGELDTTKKKKSKKKDFEKIILSTEEQKAELEAQRKSKKYLEAEFKCYNCALGFLFKDTYQAHMMRHEESNGEYLCMLCSLRFATGGVLRSHASLHSVRYRCCRCSQYIRARQTQTHAKYCHDKVSAATCHLCGRVFQDASGLQQHLKRFHMSKASNRTYSCSVCGKSYNNQAAVRTHMIKHIHRKFSCDQCPSIFSSPYTLAQHKKKHNIESTAPIKEHYCTSCGVGYASRKSLLAHQRQAAIHQDRVKSLLAHQRQAAIHQDRKYECPICNRSCPNERSLSSHISTVHSSTKQFQCDTCNARYSSRKSLTRHVRAHVAPPPVTVAVCQLCGASFKGRSKLNRHLREVCEKDKLEEELSSYYEHQHVI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00952156;
90% Identity: -
80% Identity: -