Lwla017648.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388052.1:7101941-7105589[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.55 48 5.4 0.2 1 23 85 108 85 108 0.88 2 12 0.2 18 6.7 0.1 2 23 134 156 133 156 0.94 3 12 0.22 19 6.6 0.5 1 23 234 257 234 257 0.95 4 12 0.017 1.5 10.1 0.7 2 23 283 305 282 305 0.95 5 12 0.00016 0.014 16.5 2.0 2 23 328 349 327 349 0.96 6 12 0.00037 0.032 15.3 1.2 1 23 353 375 353 375 0.98 7 12 0.0046 0.4 11.9 0.8 1 23 380 403 380 403 0.96 8 12 0.4 35 5.8 0.4 2 12 411 421 411 433 0.79 9 12 0.00036 0.032 15.4 5.6 1 23 440 463 440 463 0.95 10 12 1.2e-05 0.0011 20.0 3.1 1 23 469 491 469 491 0.97 11 12 4.2e-05 0.0036 18.3 2.0 1 23 497 519 497 519 0.99 12 12 5.8e-05 0.0051 17.9 0.5 1 23 525 547 525 547 0.98
Sequence Information
- Coding Sequence
- ATGAATACCGACAATAATGTAATTGCAATCGAGATTAATTTGGAGCCTAAGATAGAAGAAATGGATGAACCTGTGAATGCCGACCAAATCAGGACTCGATACAAGGCTATAGTTAACGACAAATTCAAGAAAGAAAATAAGACAGAGCCTGAAAAACATGAAATTAATGAAATGAATAAACACAAAGACAATATAAAGACTATATTACAAAATTCTAACGCAACTATTATCAAAGGATTCTGGGGAACCGGCTATTCTTGTAACTTTTGCGATGAACAGAGAGAGATACCTTCAGAGTTAAAAATGCATAACTTAGAAACTCATAGCAATATGGGAGACGAAGCTATCAAAGTGAAATATGCATCTGACTTAGTTATAAGACTTGATATTACTGATCTCATATGCAAACTCTGCAACGCTAGTATAAATTCTCTAGAAGAATTTACTGAACATTTAACTAAAATACATTCGCAATTTATACATACAGATATTAAGAACCACATCATTCCGTTTAAGTTTAACTCAGATACACTACAATGTTATACCCAGCGGGCTAAAAACGCGTTGGAAAACGAAGACGAGAAAGATATGAGCAACGCACAAAGGAACAGGAATCTTCTAGCGAAATTCAAACGGAGCGTACGGTCTGTCATAAAATGCACAACCGCTACACCAATCCGTGGTCATTGGGGTATCGGATACGCTTGTATGTACTGCAAATATCAAAATCCTGAAGCTTCCGAGCTAAAAAAGCACACGCTTACAACACATTCCAAAGACGTTAGCGAACTCGACAATGTCAAATACGCAACAGATATGATCATTAAGCTAGATATTACAGACCTCAAATGCAAACTATGTGACCGCGAGTGTGACACCCTTGAAGAAATCATGAACCATATAAACTATGTACACAAGCAACCCTTGTTCTTCGACACTACGAATCATATTGTTCCATTTAAATTCGGGAAGGAGGATTTAACGTGCGCTCTTTGCGACAAAATGTTTAATAATTTCAAACACTTATACGAACATATGAATGAGCATTTTCCAAACTATAAATGTAATAGTTGCAATCGGGTTTTTATCAACAGACGTTCTGTAAGAACACACGCGATTAGACACCAAAAAGGGACGTTCATCTGCTCGTTTTGCTCAAAAATCTTCGACACACGAATCAAAATGAAAGAACACGAAAGAGTTTTACACCTTAACGCTTCTAAAACTCGTAAATGCGGGTATTGTGATAAAAAATTCATGGATGTTGTAAAGAAGGCAGAACATGAAGTTAAAGAACACGGTGCTCCAGTTCAGAAATTCGCTTGTAAAGCATGTGACAAGTGCTTCGAAAGTCAACGTTATCTGAACAACCATATGAATCATTTTCATCTGCAATTAAGGCCTCATAAGTGTCCAGAATGTGACAAAGCGTTTTACAACAAAAATGAGATGAAGAGACATAGGGTAAAACATACTAAGATCAAGGAGTACCAGTGTGCTATCTGTTCGAAGTTCTACGCGACTAGGGGTTCTCTTAATCATCATACGAAGATACACAACAGTGATAGGTGCTACACTTGTGAGAAATGTGGGGAAACTTTTATACAGAAGAATGTTTGGTCGAACCATATGATGAACCATGAGGAATCGGAGGATGCTCTGGAAGCGCTGAAATAG
- Protein Sequence
- MNTDNNVIAIEINLEPKIEEMDEPVNADQIRTRYKAIVNDKFKKENKTEPEKHEINEMNKHKDNIKTILQNSNATIIKGFWGTGYSCNFCDEQREIPSELKMHNLETHSNMGDEAIKVKYASDLVIRLDITDLICKLCNASINSLEEFTEHLTKIHSQFIHTDIKNHIIPFKFNSDTLQCYTQRAKNALENEDEKDMSNAQRNRNLLAKFKRSVRSVIKCTTATPIRGHWGIGYACMYCKYQNPEASELKKHTLTTHSKDVSELDNVKYATDMIIKLDITDLKCKLCDRECDTLEEIMNHINYVHKQPLFFDTTNHIVPFKFGKEDLTCALCDKMFNNFKHLYEHMNEHFPNYKCNSCNRVFINRRSVRTHAIRHQKGTFICSFCSKIFDTRIKMKEHERVLHLNASKTRKCGYCDKKFMDVVKKAEHEVKEHGAPVQKFACKACDKCFESQRYLNNHMNHFHLQLRPHKCPECDKAFYNKNEMKRHRVKHTKIKEYQCAICSKFYATRGSLNHHTKIHNSDRCYTCEKCGETFIQKNVWSNHMMNHEESEDALEALK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -