Lwla012104.2
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- znf711_1
- Assembly
- GCA_947578705.1
- Location
- OX388051.1:6662651-6679312[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.12 10 7.5 1.3 1 23 264 287 264 287 0.91 2 19 0.0035 0.31 12.2 0.6 3 23 296 316 294 316 0.97 3 19 0.012 1 10.6 0.4 2 23 321 343 320 343 0.96 4 19 0.016 1.4 10.2 1.6 1 23 347 370 347 370 0.95 5 19 0.083 7.2 7.9 2.2 2 23 374 396 374 396 0.97 6 19 0.00011 0.0096 17.0 0.8 3 23 401 422 400 422 0.95 7 19 0.037 3.2 9.0 0.2 3 21 441 459 440 464 0.93 8 19 0.043 3.7 8.8 0.2 3 21 485 503 484 508 0.93 9 19 0.037 3.2 9.0 0.2 3 21 533 551 532 556 0.93 10 19 0.037 3.2 9.0 0.2 3 21 573 591 572 596 0.93 11 19 0.037 3.2 9.0 0.2 3 21 629 647 628 652 0.93 12 19 0.037 3.2 9.0 0.2 3 21 673 691 672 696 0.93 13 19 0.14 12 7.2 1.1 3 21 717 735 716 740 0.93 14 19 0.14 12 7.2 1.1 3 21 765 783 764 788 0.93 15 19 0.14 12 7.2 1.1 3 21 813 831 812 836 0.93 16 19 0.0033 0.29 12.4 0.2 2 23 845 867 844 867 0.95 17 19 0.0097 0.84 10.9 1.5 1 23 873 896 873 896 0.94 18 19 0.001 0.091 13.9 0.4 3 23 907 927 906 927 0.98 19 19 0.00034 0.03 15.4 3.2 1 23 933 956 933 956 0.98
Sequence Information
- Coding Sequence
- ATGGATGTAAAAGATGAATCTAATCGTATATTTACGATATGTCAAGGCTGTTTGAGCGCTGATAGAAAACTTAAATGCATAAATGGTCAGAATAAAGCGCTATTCATAAAATTGAGAGAGGACGTCGTACAAAATGAAAATGACACAAGAGGCCTGCTTCTGTGTTGGGAATGTGTAGCGTTACTAAACAAGATGAAATACTTTCAAGCTCGCATCAAAACAGCTCAGTACAGACTGGTTCAGTTTCTTCAAAATTTCTATGATAACAAGAACTACATACCACACACTTTATCGCTACTAATAAAAACCAAACACAAAGAATTTGACTACAACTATACCTTCGAAGAAGAGAAGAAAGAACTAATATTTGAACAAAACAACCTTCTTCATGAACAAAAAGACCTAATTCTCGACCAAAAAGACCTCATATTTGAACAAAAAGAAGAAATTGAAGCGGAAAGCCTGCTCACGGACATAAAAATTGAAAACAATGGACTAATTAAAGAAGAATATGATGATAATATTAGTTTAGATAATGACCCGGATTACTATGAACCAGATTTGAAACAGGAAACCGTAGAAGACTTTCCGTATTACCAAAAACAAAAAAAAAGAGTCCGCAAGTTACAAAGCATAAAAAAGTATGAAGAATTTACAACAATAACTAAAATTAAGGGTAAATTCTCTAAAGATATTTTTCAGTATTATGATATAGTGTATGTGAGTCCGAGGATAGTGGAAAATGATTATAAAGAGAAAGGAACCCATCGGACGGGTAAAAATCTGGCATATCGGTGCAAAACGTGTAGTTCTGCATATGTCAGGCGTGTGGACTATCTTAGGCATGTCACTTTTAGTCATAGCCAGCTACAATACCCAACGAACTGCACATTCTGCAAAAAAGAGATATCCTCAGAATCTGATCTCGAGGAACATTGGAAGACCCACAGTCCAATGTTACGATGTTCCATCTGCGGAGATCTGTTGCGAACTAAAGGAGAGCTGACGAAACACCTGAATAGAACGCATACTAAGACGTTTGCTTGTAATAGTTGTTCGGAGGAGTTTAGAACTCTTCGAGAATTCAGCAAGCATTACATTAAGACTCACGAGAGGGCCACCTGTGATTACTGCAATGCAAACGTATGTTCAAAGCGGAAACTCGAGGGACACATCAAAAGAAACCACATCCCAGGCCACTGTTCCATCTGCAACAAAGATTACCCAACGTACTATTTGCTAGAGAAACACATGCGGGGAGTCCATCCTACGCTAGTTCCTCACTTGTTAAAGAACGAAGAGAACGAGGAGACGCGCTACTGTGTAGAATGCGACAAGCAGTATCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCGGTGGTGCATACACCGAGGAAGAAAGTTAGGAAGTGTCCGACTGACTTAACGAACGAGGAGAAGCGCTTCTGTGTGGAGTGCGACAAGCAGTATCCTACTGTGGACAAGTACCAGAGACACTTGCAGCAGTCGGTGGTGCATACGCCGAGGAAGAAAGTTAGGTATGTATGTAGAAAGTGTCTGACTGACTTAACGAACGAGGAGACGCGCTACTGTGTAGAGTGCGACAAGCAGTATCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCGGTGGTGCATACGCCGAGAAAGTGTCTGACTGACTTAACGAACGAGGCGACGCGCTACTGTGTAGAGTGCGACAAGCAGTATCCTACTGTAGACAAGTACAAGAAACACTTGCAGCAGTCGGTGGTGCATACGCCAAGGAAGAAAGTTCGGTATGTATCGAGGAAGAAAGTTAGGTATGTATGTAGAAAGTGTCTGACTGACTTAACGAACGAGGAGACGCGCTACTGTGTAGAGTGCGACAAGCAGTATCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCGGTGGTGCATACGTCGGGGAAAAAAGTAAGAAAGTGTCTGACTGACTTAACGAACGAGGCGACGCGCTACTGTGTAGAGTGCGACAAGCAGTATCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCGGTGGTGCATACGTCGGAGAAAAAAGTAAGAAAGTGTCTGACTGACTTAACGAACGAGGAGACGCGCTATTGTGTAGAATGCGACAAGCAGTGTCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCGGTGGTGCACACGCCGAGGCAGAAAGTTAGGTATGTATGTAGAAAGTGTCTGACTGACTTAACGAACGAGGAAACGCGCTACTGTGTAGAGTGCGACAAGCAGTGTCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCGGTGGTGCATACGCCGAGGCAGAAAGTTAGGTATGTATGTAGAAAGTGTCTGACTGACTTAACGAACGAGGAAACGCGCTACTGTGTAGAGTGCGACAAGCAGTGTCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCGGTGGTGCACACGCCGAGGCAGAAAGTTAGAATACCATGCCCGGCTTGCGACAAGATATTCTCGCGCGTGTCATACAAAAATAACCACTACAGATTGTACCACATCAAGGAAAGCAAACACTACTGTGAATTATGTAATAAGTACTTTGCGAACGGGTTTGGGCTCCGCCAGCACATTCAGTTCGTCCATCAAAAGATACAGAAGCCCAAAGATAAGATCTGTGATCTATGCGGAAGAGGATTTAGTTCAAACAGGATCTTAGCGAACCACCGCCGTACGCACACAGGGGAGCGCCCCTTCAAGTGTGAGCACTGTCACGCGGCGTTCGCGCAGGTATCCGCCATGAAGACGCATCAGAAGACTCAGCACAAGAGTGTCTTGATGTCTGGGTAG
- Protein Sequence
- MDVKDESNRIFTICQGCLSADRKLKCINGQNKALFIKLREDVVQNENDTRGLLLCWECVALLNKMKYFQARIKTAQYRLVQFLQNFYDNKNYIPHTLSLLIKTKHKEFDYNYTFEEEKKELIFEQNNLLHEQKDLILDQKDLIFEQKEEIEAESLLTDIKIENNGLIKEEYDDNISLDNDPDYYEPDLKQETVEDFPYYQKQKKRVRKLQSIKKYEEFTTITKIKGKFSKDIFQYYDIVYVSPRIVENDYKEKGTHRTGKNLAYRCKTCSSAYVRRVDYLRHVTFSHSQLQYPTNCTFCKKEISSESDLEEHWKTHSPMLRCSICGDLLRTKGELTKHLNRTHTKTFACNSCSEEFRTLREFSKHYIKTHERATCDYCNANVCSKRKLEGHIKRNHIPGHCSICNKDYPTYYLLEKHMRGVHPTLVPHLLKNEENEETRYCVECDKQYPTVDKYKKHLQQSVVHTPRKKVRKCPTDLTNEEKRFCVECDKQYPTVDKYQRHLQQSVVHTPRKKVRYVCRKCLTDLTNEETRYCVECDKQYPTVDKYKKHLQQSVVHTPRKCLTDLTNEATRYCVECDKQYPTVDKYKKHLQQSVVHTPRKKVRYVSRKKVRYVCRKCLTDLTNEETRYCVECDKQYPTVDKYKKHLQQSVVHTSGKKVRKCLTDLTNEATRYCVECDKQYPTVDKYKKHLQQSVVHTSEKKVRKCLTDLTNEETRYCVECDKQCPTVDKYKKHLQQSVVHTPRQKVRYVCRKCLTDLTNEETRYCVECDKQCPTVDKYKKHLQQSVVHTPRQKVRYVCRKCLTDLTNEETRYCVECDKQCPTVDKYKKHLQQSVVHTPRQKVRIPCPACDKIFSRVSYKNNHYRLYHIKESKHYCELCNKYFANGFGLRQHIQFVHQKIQKPKDKICDLCGRGFSSNRILANHRRTHTGERPFKCEHCHAAFAQVSAMKTHQKTQHKSVLMSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -