Lwla012112.2
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388051.1:6832764-6860228[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.028 2.4 9.4 0.1 1 23 211 234 211 234 0.95 2 13 0.0077 0.67 11.2 3.1 1 23 241 263 241 263 0.98 3 13 0.023 2 9.7 1.7 1 23 267 290 267 290 0.96 4 13 6.4e-05 0.0056 17.7 1.2 1 23 328 350 328 350 0.98 5 13 0.0054 0.47 11.7 1.2 3 22 362 381 361 385 0.89 6 13 8.4e-05 0.0073 17.4 0.4 1 23 426 448 426 448 0.98 7 13 8.4e-05 0.0073 17.4 0.4 1 23 473 495 473 495 0.98 8 13 8.4e-05 0.0073 17.4 0.4 1 23 520 542 520 542 0.98 9 13 0.016 1.4 10.1 0.5 2 22 551 571 550 575 0.90 10 13 2.8e-05 0.0025 18.8 0.4 1 23 583 606 583 606 0.91 11 13 0.0014 0.12 13.5 4.3 1 23 612 635 612 635 0.96 12 13 0.003 0.26 12.5 3.3 3 23 644 665 642 665 0.91 13 13 0.018 1.6 10.0 3.3 1 23 671 694 671 694 0.96
Sequence Information
- Coding Sequence
- ATGGATTCCGAAGATAATATCATTTGCTGTGGTTGCCTTCACTCTGGGCGGAAAATGATACTTCTAGTAGAATATTGGAAGAAGCAATCTTTTCGGCAGCTTATTAGCGAAATATCTTTAACAGAAGGAGACAGTATACCCGTATGGCTGTGTTGGGAATGCGACGCGCGGATGAGCAGTTTTACTAAGTTTAAGCATCAAGTTAAAACCTCATACTCTTTGTTATATGGTTATATTAAACGGAATACAACCCTCACAAAGCTAAAACCAGCACCAAGACTATCAACCCGCAATCTACACAACTTTTCTCTTCAAAACAACAAAAACAACGAACAACAACAACAATCATTCCAAATTATAACAACAGAAAACAACGAACAGCCGAACTCCCCGGAAATATTAGACGAAAGCAACTGTGCTGTTGATACAAACTCAGATGATGACAAACAAATAAACATACGAGTGAGAAAAAAAGATAAAAAAATTAAGAGAATTTTGTTAAAAAGAAGCATTAAAAAGAAGAAGAAGAGAAAAGAAGTAGAGCTGTATAAAGAAATAGAGTTGAGTAGAGAAGAGTTGGCAGCGGACAGAAGAATAGCTATGTTGAAAGAAGACTATGTCAACGCAATGTTTAGGTGTGAACGGTGTATTCTATCTTTTCCAAATGCTGAGGACCTCAAGGACCATGTTACTGTAAAGCATGAATTGAACTCGAAAAACTTCAAATGCGAGATATGTGAGTGTACCTTCGGCTCCGAGGTGTCGTTCAACTATCACACGAACAAACACACACGCCGGTACGAATGCAACTCTTGTACAGAACGATGCACCAGTAAAAGAGCGGTTATCAAACACTATGAAATGGTGCACTATCATGGACCACCGATAGAAATTGATGTTCAAAGTCATCACCAGAATGGTGGCACAACGGACGATGCGGACGGCACGGAGGACAATGGTACAAAGCAGTCTTCAGCGACATTTTCGTGTGAGTTTTGCGACAAGAGCTTCAGATGGAAAGCTTCGCTAAGGAAGCACGTGGAGACGCACCGCATAGAGACCGGACAGAAACGGAAGCCGTACTGTGAGCCGTGCAGGTTATCGTTTACAAACACATCGAATTTACAGAAACACGTAAAGACTAGCTCTAAACATCAAATACAATTAAAACTTAGGAAACTAACAGAATCTCTCCCCGAAGACTCCTCAAATCCGGAGAAACATCAACAATTTATCGATCAGATCAAGTGCTCGGTGAACACTGCTAAGGAGAAGTACCCCTGTCCTCAATGTGACAAGAAGTTCCAGTGGAGAGGCAATCTGTTGAGGCATCTTAATAGTCATGTGGCGAGGTTCCACTGGCGAGGCAAGCTTCTAAGGCAGATCAAATACTCGGTAAACACAGCTAAGGAGAAGTACCCCTGTCCTCAATGTGACAAGAAGTTCCAGTGGAGAGGCAATCTGTTGAGGCATCTTAATAGTCATGTGGCGAGGTTCCACTGGCGAGGCAAGCTTCTAAGGCAGATCAAATACTCGGTAAACACAGCTAAGGAGAAGTATCCCTGTCCTCAATGTGACAAGAAGTTCCAGTGGAGAGGCAATCTGTTGAGGCATCTTAATAGTCATGTGGCGAGAGCAAATGGCGAGTTAGTCTGTGAGCCGTGCAACAGAACATTCTCTTCGATAGCAACTTATAAGCAACATATGAAGATCAGCAGGAAACATGTCAGCGAGAATGATTTCAAGTACATGTGCAGTGACTGCGGCAAGCGCTTCGCGAACAAGACTCGCCTCAAAGACCACGTGGATTGGGAGCACCTCAAGAACTACGTGCACACGTGTTCTGTATGCCAGAAGGTATTCAAGAGCCATACATCGCTGTACCTGCACAAACAAGTAGTGCACAACAAAGACAACGCGGAGCATCTGTGCGACCACTGCGGAAAACCTTTCCCCAACCAGGCCAAGCTCCGTTGCCACATGCTAGCTCTCCACAGTTCACAATCCGCCTACAAATGTAACACTTGTGGCGCTCGCTTCAGTTGGCTGTCCTGCCTATCGAGACACAACAAGAAACTACATGCCAACGTGAACACTATCCCCAATAGATAA
- Protein Sequence
- MDSEDNIICCGCLHSGRKMILLVEYWKKQSFRQLISEISLTEGDSIPVWLCWECDARMSSFTKFKHQVKTSYSLLYGYIKRNTTLTKLKPAPRLSTRNLHNFSLQNNKNNEQQQQSFQIITTENNEQPNSPEILDESNCAVDTNSDDDKQINIRVRKKDKKIKRILLKRSIKKKKKRKEVELYKEIELSREELAADRRIAMLKEDYVNAMFRCERCILSFPNAEDLKDHVTVKHELNSKNFKCEICECTFGSEVSFNYHTNKHTRRYECNSCTERCTSKRAVIKHYEMVHYHGPPIEIDVQSHHQNGGTTDDADGTEDNGTKQSSATFSCEFCDKSFRWKASLRKHVETHRIETGQKRKPYCEPCRLSFTNTSNLQKHVKTSSKHQIQLKLRKLTESLPEDSSNPEKHQQFIDQIKCSVNTAKEKYPCPQCDKKFQWRGNLLRHLNSHVARFHWRGKLLRQIKYSVNTAKEKYPCPQCDKKFQWRGNLLRHLNSHVARFHWRGKLLRQIKYSVNTAKEKYPCPQCDKKFQWRGNLLRHLNSHVARANGELVCEPCNRTFSSIATYKQHMKISRKHVSENDFKYMCSDCGKRFANKTRLKDHVDWEHLKNYVHTCSVCQKVFKSHTSLYLHKQVVHNKDNAEHLCDHCGKPFPNQAKLRCHMLALHSSQSAYKCNTCGARFSWLSCLSRHNKKLHANVNTIPNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -