Lwla000943.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388042.1:5373038-5389368[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00043 0.037 15.1 1.4 1 23 279 301 279 301 0.98 2 12 0.0015 0.13 13.4 1.3 2 23 309 330 308 330 0.94 3 12 0.75 66 4.9 0.3 1 23 334 356 334 356 0.94 4 12 0.00018 0.016 16.3 1.0 1 23 361 384 361 384 0.98 5 12 0.0053 0.46 11.7 0.2 1 23 388 411 388 411 0.94 6 12 0.003 0.26 12.5 0.0 2 20 436 454 436 456 0.94 7 12 0.00088 0.077 14.2 1.8 3 23 470 491 470 491 0.98 8 12 0.044 3.8 8.8 0.6 2 23 511 533 510 533 0.97 9 12 3.3e-05 0.0029 18.6 1.3 1 23 544 566 544 566 0.97 10 12 9.3e-07 8.2e-05 23.5 1.3 1 23 572 594 572 594 0.99 11 12 1.7e-05 0.0015 19.6 0.7 1 23 600 622 600 622 0.98 12 12 2.6e-06 0.00023 22.1 0.6 1 23 628 651 628 651 0.98
Sequence Information
- Coding Sequence
- ATGGAAGACGTGAAAGTGTGTCGCATCTGCTCTATAATGGACGTGAAATTGCACGATCTGCGATCACACCCATTAGAATCTTATTATGAGTCTGTAATAGGAACCAATGCTCTATACACCAACTTGCCACCATATGCCTGCTTTGAATGTGCAGCACTTGTGAGGAAATTTTACTTCTTTAGACAGAAATGTCTACGGAGCCAGGCTGTACTCCACAGGACTGCAAATTCCGTTGGCAAGCTTAAATCTAAAGAAGTAATATTAATAGACAGAAAAGGCCTCCACATCACCTCAAACCTTCAAATCGTCAACTTGCCCAATATAGAGATAGAGGTATCACAGGTACCAAAACCTCAATTAGATACAAGTGTAAAGCTTGAACCAGGCAGTGAAGATGAAGATGACAAATTTAAAGTTGAAGATCACAACTATGCTTCCTTTAACGCTACGGATCGCAGTCTCTCCAGCGATGATGATGAAGATGATGAACCGCTATCACTGCATAAGAAGAAGAAAAATCAAACAGTAAAAGCAATTAAGGAGAAGGTGTACTTGAAACAGGAATTTGAACCAGAATTTGCTGGTGGTTCTAGAGAAGCAATTGAAGTTGAAGTGGAAGTTCCTAAAGTGATTGAGAAGAAAAAGAAACGGCCATTGAAAAGACGAGTTGCTAAGAACAAAAACAAAAAAGAGGTGTCTAAAAAACCAAATTTGTCAAGTGAATTCAAATGGAATGATTTTGCACAGTACATTGATGTTGTAACTTTGACGTTAGAAGAGCAGAAAGAAGAGATACAGAAGCGGAAGGAGTCATCGAACTTCTTAAACTCTCCTTTCCAATGTAATCTGTGTTATAAAGGGTTCATAGATAATGACGCCTGGAAGCACCATGTCAGCAAACATGCTCCGACCGCAGGCAGCATAGAGTGTGAAGTCTGCAAATTTAGGTTTAAAACCAAGCGCGCTTATCAGAAACATGCGTCCAACCACGAGAAGAAATATGCCTGTAAATCATGTCCATACATATCTACTAACACGACTCAAGCTAAACAGCATCAAGGGTGGCATAAAGGAATTACTTTCAAGTGCAAGTTTTGTGACGAAGTCTTTACAATATGGACTTCTTACATGAGTCACGTGCGTATCAAACACCCGTCGGAGTTCATATGCGGCTTCTGCGGGTACTCGTTTATCAGCAAGCTCGGTCTCGCCATGCACAAGACTATGATGCACAAGGATGTCCAGGAGAAGGAGAAAGAGAAAGCAGAAGAAGAAAAGGCAGAAGAGAAAACAGAAGATGGTCCATACTGCAAAGAGTGTGATGTCAAGTTTATATCGGCGGAGGCGTATAAGAGGCACATAGTGATGTCGGTGAAGCACACCGAGAGTACAGACTCTATCAAAGGCTGTCGGACATGTGGCGCGACGTTCGAGAACTCTGAAGAGTTACGGCTGCATCATCGTAAGGAACACACGCGGAAGAGACCCAAGAACTACGGGAAGAAACGTTCCAACGTGACTTGGCCTTCCAAATGCGAACACTGCACAGAAGTGATCGCGAACGCGCGCGAGTACTGGACGCACTTCCGGCGCGCGCACCCCGACAAGAACTACCCCATACAGAAGAACCACATCTGCGACATCTGCGGCAAGAGCTTTAGGGGCAACGCCTTCCTCGTATACCACAAGCGCACGCACTCGGAAGAGCGCGCGTACAAGTGCTCGCAGTGCGACAAGGCGTTCTTCAACCGCGTCAACCTGAACGTGCACGAGAGGACGCATTCCGACAACCGGCCTTATCCCTGTACTGTGTGCTTCAAAGCTTTCAAGGGTAAAGGAGCGCTGAACAGACATTTTAGAAGCCACACAGGTCAGAAGCCCTACGAATGCGAAGTATGCGGTAAGAGTTTCTCCCAGTCGAACAGCAGGAAGCTCCACGTGCGCACCGTACACCTGAAGCAGCCCGCGCCCTACGTCAGCCGCAACCGCCTCGAGAGGCGGAAGCAGAACAAGGAACCGCCCGCGCAGCAGTTTATATATTGA
- Protein Sequence
- MEDVKVCRICSIMDVKLHDLRSHPLESYYESVIGTNALYTNLPPYACFECAALVRKFYFFRQKCLRSQAVLHRTANSVGKLKSKEVILIDRKGLHITSNLQIVNLPNIEIEVSQVPKPQLDTSVKLEPGSEDEDDKFKVEDHNYASFNATDRSLSSDDDEDDEPLSLHKKKKNQTVKAIKEKVYLKQEFEPEFAGGSREAIEVEVEVPKVIEKKKKRPLKRRVAKNKNKKEVSKKPNLSSEFKWNDFAQYIDVVTLTLEEQKEEIQKRKESSNFLNSPFQCNLCYKGFIDNDAWKHHVSKHAPTAGSIECEVCKFRFKTKRAYQKHASNHEKKYACKSCPYISTNTTQAKQHQGWHKGITFKCKFCDEVFTIWTSYMSHVRIKHPSEFICGFCGYSFISKLGLAMHKTMMHKDVQEKEKEKAEEEKAEEKTEDGPYCKECDVKFISAEAYKRHIVMSVKHTESTDSIKGCRTCGATFENSEELRLHHRKEHTRKRPKNYGKKRSNVTWPSKCEHCTEVIANAREYWTHFRRAHPDKNYPIQKNHICDICGKSFRGNAFLVYHKRTHSEERAYKCSQCDKAFFNRVNLNVHERTHSDNRPYPCTVCFKAFKGKGALNRHFRSHTGQKPYECEVCGKSFSQSNSRKLHVRTVHLKQPAPYVSRNRLERRKQNKEPPAQQFIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00121701;
- 90% Identity
- iTF_00974015;
- 80% Identity
- -