Lwla005504.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388040.1:1912010-1926172[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.3 5.5e+02 2.0 0.1 2 23 168 192 167 192 0.82 2 15 0.0067 0.59 11.4 2.1 2 23 241 262 240 262 0.96 3 15 1 89 4.5 0.1 6 23 274 292 274 292 0.95 4 15 0.38 33 5.8 0.1 2 23 303 325 302 325 0.93 5 15 6.8e-08 6e-06 27.1 1.0 2 23 348 369 348 369 0.97 6 15 0.0012 0.11 13.7 3.5 1 23 375 398 375 398 0.96 7 15 0.0025 0.22 12.7 0.0 1 23 404 426 404 426 0.97 8 15 3.2e-06 0.00028 21.8 1.8 1 23 432 454 432 454 0.98 9 15 0.29 25 6.2 3.1 1 23 579 601 579 601 0.94 10 15 0.00059 0.052 14.7 3.7 2 23 608 630 607 630 0.92 11 15 5.3e-06 0.00047 21.1 3.3 1 23 636 658 636 658 0.98 12 15 1.5e-06 0.00013 22.9 3.5 1 23 664 686 664 686 0.98 13 15 0.0001 0.0088 17.1 0.2 1 23 692 714 692 714 0.98 14 15 0.00024 0.021 15.9 1.7 1 23 720 742 720 742 0.91 15 15 0.0018 0.16 13.1 1.8 1 23 748 771 748 771 0.93
Sequence Information
- Coding Sequence
- ATGAATAACGCAACTGAGCATATATTTCTACTAAATCCTGTGACGAGTCAGTCTTCGGAACCTTTGCGAATAGGCGGCCTGGTACCGCCGCCCTCACAAGTAAACCTTGAAAATGTCAAGGACTTCTCACATGTTTGTCGGACATGCGCTACTATCACAGAGTTTGTTATGCCCATATATGCTGGCGAGGGGCTGCAGAACAACTTGGCTGATAAAATAAAGAAATACTTACCAATACAGGTAAGTAAGAGCGACGAGCTGCCTCTGGTGGTGTGCTACCAGTGCGCGAGCACCCTACTGGCATTCCACGAGCTGTTCATGTGCTGCGAGCAGGCCGACACCGCCCTGCACACCAAGCTGCGCTCCAACCAACGGAAATTAAATGGAGCATCAAACATGAAAGAAGTGGATGGCGAGAGCAAGTTGTTTTACACGAGTGTGAGAAAAGCTCTCGCTAACATTCATATTGATCTGGACGAAGAGGACACAGATATGCAGATAGTTTGCCAGAAGTGTGAGGAGAAGACAGCACTGAGTACTGTATACAGCCTGGCTAACCATATCATATCGGACCACTCTCCTGATGTACTTGACAACTCCATTAAGACATTTATCACTGAATACATAACGTTTGAACAAGTGCTAGTGGAGTCGGACGATCCTGACATAGAAATAGTATCAGACACTACAGAGAAAACTCGTATAGTCCTACCGTCCTTGCACTGTCCGTTCTGTCCAAGTGTGTTCTCGTCGGCCACGCGGCTCGCGCACCACCTCAACAAGCACGAGCAGGTGAGCATGGCGGACAGCGTCATGTGCTGCGACCTCGTCTACAGCGACAAGAAGCTCTTCGTGCAGCACTGGCAACAAGCTCACGTCAGCAAACCAACCCACGACCAAGCAAAAGTATGCGTCAACTGTGACTTTACAGCTGACACAGTAGACGAACTGAAGCAGCATTATAAAGACGCACATAACGATCAGCTCTTTGCGAAAGAGAAAAAGGCAGAGCGTCCAAACAACCAGAAGTACATCCCGGCGGTATGTCCTGAGTGTAACAAGACGTTCTCCAACAAGTACAACATGTTCGCACACATGCGCAGCCACACGCGCTCCGCCGTGTACCCATGCGACCAGTGTAGCCGGACATATCACAGCCAGGGGAACCTCAGCCACCACAAGAGGCTGGCGCACCAGGGGATACTGAAGTACATATGTGCGGAGTGCGGGGAAGCCTTCCCCAGTCGGTCAGAACGCGACATACACGCGCGCATACACTCGGGAGAGACCCCCTACAAGTGCCCGCACTGCGGCAAGTCGTACCGCGCCAAGAACACGCTCACACAACATCTAGAGATACACGCAGGCATACGCAAACACGATTGCAAGATCTGCTCCAAAAAGAGCCCCTGCTTGCCCGAGGAGCCCCGCTCTGCTTCTGACCTCTCCGAGCTGTCCGATAACGAGCCACTAGCCAAGTTCGCAACCAAAAAGTCCGCAAATCTCTATACGAATTTCTACCGAGCACTCGTGAACTTTAGAAACCATTTTGTTAGTGATGAACATCATGAGGATTATCCTGACTTTACGGACTCGAGCGTGTCTGACACAGAGGAGAATGACGTGGACAAGTTCGACGACCTGACGCAGTGCAACATGCGGCGCGACCGGCTGGACGAGGCCACGCGGCGCGAGCTGCGCGACGTGCAGCACAGGCTGGACAACAAGACGTACTACACGTGCCGCGTGTGCGGCAAGCACCTGAGCTCGGCGCACACGTACCTGTTCCACGCGCGCATCCACACGGGCGAGCGGCCGTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCGCACGGCCTGCAGCGCCACCTCACCGAGACGCACGAGCGCGTGCGCCGCTACAACTGCCACCTCTGCACCAAGAACTTCGCCAACTCGCAGAACCTCAAGCAGCACCTACGAATACATACGGGGGAGAAGCCTTTTGTTTGTTCTCATTGCGGGAAGAGGTTCACGCAGAGCGGTTCGTTACACGTGCATCTGAAGATTCACAGTGACCAGTTTCCTTACGAGTGCGCGGAGTGTGGGGCTAAGTTTAGACTGCGATCCGGACTAGTGCGGCACAGACTGAAGCACACGGGCGAGCGGCCGCACGTGTGCGCGACGTGCGGCAAGGGCTTCCGGCAGCGGCACGAGCTCACGACGCACAGCGCAGCGCACAGCGGCGCCGCGCCGCACGCCTGCGCCGCATGCCCGCGCGCCTTCCGCCAGCGCCGCGCGTTGCGCCACCACGTCAAGCGCGTGCACGAGGCCGAGCCGCCCGACGTCGTCTACAGTCACGTCACGCACTACTGA
- Protein Sequence
- MNNATEHIFLLNPVTSQSSEPLRIGGLVPPPSQVNLENVKDFSHVCRTCATITEFVMPIYAGEGLQNNLADKIKKYLPIQVSKSDELPLVVCYQCASTLLAFHELFMCCEQADTALHTKLRSNQRKLNGASNMKEVDGESKLFYTSVRKALANIHIDLDEEDTDMQIVCQKCEEKTALSTVYSLANHIISDHSPDVLDNSIKTFITEYITFEQVLVESDDPDIEIVSDTTEKTRIVLPSLHCPFCPSVFSSATRLAHHLNKHEQVSMADSVMCCDLVYSDKKLFVQHWQQAHVSKPTHDQAKVCVNCDFTADTVDELKQHYKDAHNDQLFAKEKKAERPNNQKYIPAVCPECNKTFSNKYNMFAHMRSHTRSAVYPCDQCSRTYHSQGNLSHHKRLAHQGILKYICAECGEAFPSRSERDIHARIHSGETPYKCPHCGKSYRAKNTLTQHLEIHAGIRKHDCKICSKKSPCLPEEPRSASDLSELSDNEPLAKFATKKSANLYTNFYRALVNFRNHFVSDEHHEDYPDFTDSSVSDTEENDVDKFDDLTQCNMRRDRLDEATRRELRDVQHRLDNKTYYTCRVCGKHLSSAHTYLFHARIHTGERPCVCHVCGKQFRAPHGLQRHLTETHERVRRYNCHLCTKNFANSQNLKQHLRIHTGEKPFVCSHCGKRFTQSGSLHVHLKIHSDQFPYECAECGAKFRLRSGLVRHRLKHTGERPHVCATCGKGFRQRHELTTHSAAHSGAAPHACAACPRAFRQRRALRHHVKRVHEAEPPDVVYSHVTHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00300474;
- 90% Identity
- -
- 80% Identity
- -