Basic Information

Insect: Lacanobia wlatinum
Gene Symbol: -
Assembly: GCA_947578705.1
Location: OX388031.1:19844628-19856357[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0017 0.15 13.2 4.3 1 23 229 252 229 252 0.97

2 12 0.00027 0.024 15.8 1.2 1 23 259 281 259 281 0.96

3 12 3.8e-05 0.0033 18.4 0.4 2 23 288 309 287 309 0.97

4 12 1.3e-06 0.00011 23.1 0.4 1 23 315 337 315 337 0.98

5 12 1e-05 0.00091 20.2 0.6 1 23 346 368 346 368 0.96

6 12 6.5e-05 0.0057 17.7 1.4 2 23 375 396 374 396 0.96

7 12 0.00061 0.053 14.7 7.5 1 23 402 424 402 424 0.98

8 12 4e-09 3.5e-07 30.9 0.7 1 23 430 452 430 452 0.99

9 12 2.8e-05 0.0025 18.8 1.6 1 23 458 480 458 480 0.98

10 12 4.8e-07 4.2e-05 24.4 1.2 1 23 486 507 486 507 0.98

11 12 9.6e-05 0.0084 17.2 1.3 1 23 513 535 513 535 0.98

12 12 0.007 0.61 11.3 2.4 1 23 541 563 541 563 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0017	0.15	13.2	4.3	1	23	229	252	229	252	0.97
2	12	0.00027	0.024	15.8	1.2	1	23	259	281	259	281	0.96
3	12	3.8e-05	0.0033	18.4	0.4	2	23	288	309	287	309	0.97
4	12	1.3e-06	0.00011	23.1	0.4	1	23	315	337	315	337	0.98
5	12	1e-05	0.00091	20.2	0.6	1	23	346	368	346	368	0.96
6	12	6.5e-05	0.0057	17.7	1.4	2	23	375	396	374	396	0.96
7	12	0.00061	0.053	14.7	7.5	1	23	402	424	402	424	0.98
8	12	4e-09	3.5e-07	30.9	0.7	1	23	430	452	430	452	0.99
9	12	2.8e-05	0.0025	18.8	1.6	1	23	458	480	458	480	0.98
10	12	4.8e-07	4.2e-05	24.4	1.2	1	23	486	507	486	507	0.98
11	12	9.6e-05	0.0084	17.2	1.3	1	23	513	535	513	535	0.98
12	12	0.007	0.61	11.3	2.4	1	23	541	563	541	563	0.97

Sequence Information

Coding Sequence: ATGGATTCGGAAACTATCACAGAAGACGGTGTGAAAATTGGTGAAGAAGTGAGAGCAACTAGAGAAGACTACATTGAAATAGAAATACCGTATAACGTGTATGAATACCTTAGCTCAGACCATTACAATGTTCAAAACATGTGTCGCATATGCTTCGCTACGGATAACGAGGTTTTATACCCATTAGCTGCTACCAAAGAAATCAATGTTTTAGGTCATATGTTAACGACATTTACTACTGTTCAACTGTTTCCAGGCGATGGTTTGCCACTAAATATATGTGAGCCATGTCAGGCTCAAGTTGTGCAGAGCTATGACTTCAAGATCAAGTGTGAGAAATCAGACTGCATGCTCAAGTCAATATTGAGGGGAGAATTCATTGCTAAAGAGGAAATACCTGATCATAGCACGGATATTAAGCCAGAAGAAAAATTAGAAGATAATAATAATGGAGAAGGAAATGGCAATGTTTATTTAAATAATGAAATTTTTGATGTTAAACAAGAAGCAGAACTGCTGGAAGATGTGCAATATTTAGAAGATCTCAGTGATAACAGTGATAGTGGTAACCTTTGTATAGTACAAAAACCAAGAAATAGAATAAAGTTTGAAAAAGATGAAAATTATGAATCTAAACCTCTAAAAAATAAACTTAAGAAGAAACATGGAAATAAAGAAAATACGTTTACCTGCAAGATTTGTTCTAAGAAATTTCAAAATGCGAAATTATTCCATGCACATGTGAAGAGCAAGCATCCGAACACCCAGCCACTGTATTCTTGTAACCAGTGCACCGAGTCATTTAACTCTGAACACGATCTTAAAGTGCATGGATCTATACACAGTAAAGGAAACCCTTGGAGGTGCAACCAATGTCCTAAGGAATTTAGTGCTCGTGCAATGCTCCGCCGCCACATCTCGCGGCACATGGAGTCCAAACGTTTCTCGTGCGAAGTGTGCAACAAGGCGTTCACCGAGCAGTATGCGCTACGGAGACATGCGCGCGTTCACACTGGAGAGATCCTTGAGAAGAAACACGCTTGCACTATGTGTGACAAAAGGTACAGTGACAGCGGTCTCCTAGCGGCGCACATGTCGCGCCACATCGGGCTGCGGCCCTGCGAGTGCAGCGTGTGCGGCAAGCGCTTCCCATCCAACCGCCTGCTGTCCTCACACCGGCTGGTACACTCGGATCGGAAGCCGTACGCCTGCCAGTACTGTGATAAACGTTTCCGCCACGAGTCGACGCGCAACACGCACCACCGCACGCACACCGGAGAGAAGCCCTACGTGTGCTCCGTGTGCGGCAAGCGGTTCATACAGAACTCCAACCTCACGCTACATATGAGGACGCATACAGGCGAGCGCCCCTACTCATGTTCGACATGTGATCGCAAGTTCACATCAGGATCTACACTCAAGAGCCACGAACGGATACATTCAGGGGAACGACCCTTCAGCTGTGAAATTTGTGGAAAAAGCTTCTCGCGCAAGAACTTAAGCGCGCACATGCGCAAGCACACGGGCGAGCGGCCCTACGAGTGCGGCGTCTGCTCTAAGAAGTTTGCCAACGCTACGCGGCTCCGGGACCACCACCGCGTACATACTGGTGAAAAACCATTTGACTGCTCATTGTGCACGCTAAAATTCGCTACAAAATCCCAGCAGTTAAAACATTCCAAAACACACTTGAAAAAGAAGAGAACACAACAGCATACTTCGGATAAAGATCGAGACAAGGAGAACCGAGGACTTGTCATATTGCAACACGTTGAACCCGTGCCTATCGTGACTGATCGGATTATGTTTAATAAGGAGCATGGAGAACTAATAACGGTTAACGAAAATGTACTCATCGACGAGACGCCCGAAGATGATTCCAAAGAACTGACAGTTAACATCATCCACGACGTCCCATTAGAAGTGACAGGGGAGTTAGTACTACAGGACGATAGTAACATGAAAGAAGTTTTAGTCGTTGATAACAGCCAAACTAATAACTTCGAAGGTGACACTATATGCTTGGATACCAACAACGTGAATATCATCGATGATGGGAACTATGATGGGGATATGAACTTAGTGACAGTGAATGAGGAGGGAGTCAGCATTTCGACCGCGAACCTCGATGGAACCACAGTGAAACTGTACCAGTTAGACCAAAGTTTAGTGCAAATACAAAGCTTAGGTGGACAAGTCACTATTAGTAAGATAACTAGCAAAATGACTGCTAACTTTTAA
Protein Sequence: MDSETITEDGVKIGEEVRATREDYIEIEIPYNVYEYLSSDHYNVQNMCRICFATDNEVLYPLAATKEINVLGHMLTTFTTVQLFPGDGLPLNICEPCQAQVVQSYDFKIKCEKSDCMLKSILRGEFIAKEEIPDHSTDIKPEEKLEDNNNGEGNGNVYLNNEIFDVKQEAELLEDVQYLEDLSDNSDSGNLCIVQKPRNRIKFEKDENYESKPLKNKLKKKHGNKENTFTCKICSKKFQNAKLFHAHVKSKHPNTQPLYSCNQCTESFNSEHDLKVHGSIHSKGNPWRCNQCPKEFSARAMLRRHISRHMESKRFSCEVCNKAFTEQYALRRHARVHTGEILEKKHACTMCDKRYSDSGLLAAHMSRHIGLRPCECSVCGKRFPSNRLLSSHRLVHSDRKPYACQYCDKRFRHESTRNTHHRTHTGEKPYVCSVCGKRFIQNSNLTLHMRTHTGERPYSCSTCDRKFTSGSTLKSHERIHSGERPFSCEICGKSFSRKNLSAHMRKHTGERPYECGVCSKKFANATRLRDHHRVHTGEKPFDCSLCTLKFATKSQQLKHSKTHLKKKRTQQHTSDKDRDKENRGLVILQHVEPVPIVTDRIMFNKEHGELITVNENVLIDETPEDDSKELTVNIIHDVPLEVTGELVLQDDSNMKEVLVVDNSQTNNFEGDTICLDTNNVNIIDDGNYDGDMNLVTVNEEGVSISTANLDGTTVKLYQLDQSLVQIQSLGGQVTISKITSKMTANF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00952056;
90% Identity: iTF_00973995;
80% Identity: -