Lwla027758.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388047.1:16328430-16379349[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.48 42 5.6 0.2 1 23 595 617 595 617 0.95 2 21 5.8e-05 0.0051 17.9 0.4 1 23 629 651 629 651 0.97 3 21 0.0006 0.052 14.7 2.7 1 23 657 679 657 679 0.98 4 21 0.0002 0.018 16.2 4.3 1 23 686 708 686 708 0.99 5 21 3.7e-06 0.00033 21.6 0.4 1 23 714 736 714 736 0.93 6 21 1.2e-07 1.1e-05 26.3 0.1 1 23 742 764 742 764 0.98 7 21 8.6e-06 0.00075 20.5 1.9 1 23 770 793 770 793 0.96 8 21 0.00016 0.014 16.5 3.0 1 23 799 822 799 822 0.96 9 21 9.5e-05 0.0083 17.2 0.9 2 23 829 850 828 850 0.97 10 21 1.8e-05 0.0016 19.5 1.0 1 23 856 878 856 878 0.97 11 21 0.13 11 7.3 0.0 1 22 884 905 884 905 0.96 12 21 0.13 11 7.3 0.0 1 22 921 942 921 942 0.96 13 21 0.13 11 7.3 0.0 1 22 958 979 958 979 0.96 14 21 0.13 11 7.3 0.0 1 22 995 1016 995 1016 0.96 15 21 0.13 11 7.3 0.0 1 22 1032 1053 1032 1053 0.96 16 21 0.13 11 7.3 0.0 1 22 1069 1090 1069 1090 0.96 17 21 0.13 11 7.3 0.0 1 22 1106 1127 1106 1127 0.96 18 21 0.13 11 7.3 0.0 1 22 1143 1164 1143 1164 0.96 19 21 0.13 11 7.3 0.0 1 22 1180 1201 1180 1201 0.96 20 21 0.13 11 7.3 0.0 1 22 1217 1238 1217 1238 0.96 21 21 0.073 6.4 8.1 0.0 1 22 1254 1275 1254 1275 0.96
Sequence Information
- Coding Sequence
- ATGAATCTGTGTTGTTTTATCTGCAATAACAAAGCTGGCCTCTCACTCCGAAATGCTTCAAGCTTGTTTGGGGAACATAATACATTACAATCCGGCAGGAAAGTATCGGATGTTGTAGGTGAGATTGTTGGAAAGCCGGTGGTAGAGAATAAAGTGCATACAAATATACTGTGTAAGAAGTGCTTTAAGACTTGCTCGGAGTATGACAGCATTCAAGTCAGATTACAAACAATAAAGACAGATTTACTAGAACAATTCAAACAATCGTTACCTAGTCATAATCTAGACTATGATAACTATGAGAAGAATGTGAGTTCGCCGCCGAAGCCTAAACCACTCCTAGGAAAGAAGCTGGTGTTGCCAGCGTCAAAATTACAACCTATACCACCGGATTTGTTGCTAAAAGTGGGGAAGTTAGCTTCGTTTTCGAAACCTAATATAATTTTACCACAAATTAAGCCGACCACAGCATCAACACTAAACCTAAAAGTAACCGTTGGATCATCAGTCCTCACACAAACAATAAAAACGTCAACTAGCAAACCAGTCGAAAACCCCACATTAGACTCAAATTCCATCCTCAATTCACTCACAAACGCCTTGAAAGAAGACCTAGATGATTTGGAGACAACGCAAGAGAATATGGACTCTATGAACCAAAAGAATTCGATTTTGAGTTTCAATGTGAACTCTTTGCCGAAAGATTTCCTTTctggggctattttgacgaaaattagtgcaaagcaggatgatggtgatgaaaagggggatgaagctaatgatgatcatcctatggagattgatgaagATTGTCTATCTGTGGTTCCTGTAACAAGCGCTTCTGGTGGCAACTTAGTACTACAAGTTGAGGGATTACAGTCAAAATCCGAGCCGGCTCCGGAAGTCAGCGAGTACCTCAACTTACCGTCGCTAGATGGCGCTGACGGCGAACTGACTGACGCGCAGAAGTACATCTTCGGCAAGCTTGAGATACTTAACGGAGCTGACGACGACGATGATGATGATGAAGGACATGGCGCTGACGGCGAACTGACTGACGCGCAGAAGTACATCTTCGGCAAGCTTGAGATACTTAACGGAGCTGACGACGACGATGATGATGATGAAGGACATGGCGCTGACGGCGAACTGACTGACGCGCAGAAGTACATCTTCGGCAAGCTTGAGATACTTAACGGAGCTGACGACGACGATGATGATGATGAAGGACATGGCGCTGACGGCGAACTGACTGACGCGCAGAAGTACATCTTCGGCAAGCTTGAGATACTTAACGAAGCTGACGAGGATGTTGATGATGATGAAGGACACACAATAGTGGTGGACAGTGAAAACGGCTCGATACTCCGCATGGTGGCCGGACAGAAGTTCATCTACGAAGGCGGAGAGATATCGCTGGTCATGCCGGACGAGGATGAGCAGCAAGACAATGATGCTGATCAGCTCGAGAACGGGGATAGTCAAGATTCTAACGACGAGTCTCAGATAGAGTTACAAGTTTCGGGCGACGAAGAAACGGCGAACGCTATTATTGCAGCAGCCCAAGAACAAGGCGGTGCCTTCATAAAGGTGGAGTCTGGCGAGATGTTCCGCGTGAAGTCTGTGTCCAGCGCCACGCAGCGCGAGCCGCTGCAGATAGTCGCGCAGGACGGCAACGTCTTCAAGTGTTTGCTGTGCGAGAAGAACGATGAAACCCCACCAAGTGTAGAAGATGCAGACACAATGATGCGGCACTTGAAAACAGTCCACGACGCAAGAATATACCTGTGTCGCTTCTGCGGCGCTGTTATGAGGAGACGCACGGAATATGCAACGCATATAGCGTCGCACGCCGGCGACAGGGCGGGCGGAGCGCGCGTATCGCACCGCTGCGCGGACTGCGGCAAGAGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACGTGCACTCGGGCGCGCGCCCGCACCAGTGCGGCGTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCATCAGGCGCACCTCAAGACGCATGCGGTCCGTCCGCGTCCCTACAAATGCAGCCAGTGCGGCAAATCATTCCTCACGCAACAGAATCTGCACCAGCATGAGAAAACACACTCGGGCGTCAAGGATTTCGTCTGTAATATATGTAATAAAGCCTTCAGCACACAGCACAACTTAGAAGTTCACGGTGTGGTCCACTCCGGGAACAAAGCGTTTGTATGCAGCGTTTGCGGCAAGGCGTTCGCGAGGAGAGCAGAACTGAGGGACCACATGCGGATACACACGGGAGAGCGTCCATTCTCGTGCGACATATGCGGCGCCCGCTTCACGCAGCGCTCCAACCTGCACTCGCACCGCAGAGCCACGCACTTCGACGACAAGCGCTACCACTGCGAGCAGTGCCCCAAGAGGTTCAAGAGGAGGAGGTTATTAGAATACCACATTAAGGCTTCGCACACAGGCGAGCGGCCTCTCAAGTGCGGCATCTGTCAGCTGTCGTTCGTGTACCCCGAGCACTACAAGAAGCATGTGCGCATACACAGCGGGGAGAGGCCGTATGTTTGTGAGATCTGTGGCAAATCGTTCAACTCCCGCGACAATCGCAACACACACCGCTTCGTGCACTCCGACAAGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAAGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAAGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAAGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAAGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAAGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAAGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAAGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAAGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAAGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAAGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAAGAAGCCTTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAACAGCTGCTCTACGCGCACATGAACACCAGCGTACGTATCACAACACAACACAACACAACACACAAGAAGCCTTACGAGGGCATTTGGCGGAGTCGATAGTAGTCAATCAACCTAGGGTTATCAAAGTTACTGAAAATAATCAACCAACTGAGATTACGCACATAGAAGCGAAAAATAGTAAATTTGAATCGATATTTGACACCAGTGAGTTAGAGGCGAGCGTGAAGTCTGTCGTGAAATCGGAAGCGGAAGTGAATCTAGCAGATGCCAAGTTCTACATCACAGAAGATAAGAAGTTAATATTACAAGACAGTGATAAAGCCACGTTGAACCTTATGCAGGAAGGCGACGAGTCGACGTTGCTGACTATACATAACATAGGCGAGAGAGCTGAAGGCACTATTCTAGAAGCGGTTGATGTCGATCAACTCGGGGATCAGGCTGAGATCGTGGCAAACGACGAAAATGGCGGCATGGTGCGCCTCATACAGATCAAGCTACCCGACGGGAACAACGGCTGGGTCGCCATCAACCGTTGA
- Protein Sequence
- MNLCCFICNNKAGLSLRNASSLFGEHNTLQSGRKVSDVVGEIVGKPVVENKVHTNILCKKCFKTCSEYDSIQVRLQTIKTDLLEQFKQSLPSHNLDYDNYEKNVSSPPKPKPLLGKKLVLPASKLQPIPPDLLLKVGKLASFSKPNIILPQIKPTTASTLNLKVTVGSSVLTQTIKTSTSKPVENPTLDSNSILNSLTNALKEDLDDLETTQENMDSMNQKNSILSFNVNSLPKDFLSGAILTKISAKQDDGDEKGDEANDDHPMEIDEDCLSVVPVTSASGGNLVLQVEGLQSKSEPAPEVSEYLNLPSLDGADGELTDAQKYIFGKLEILNGADDDDDDDEGHGADGELTDAQKYIFGKLEILNGADDDDDDDEGHGADGELTDAQKYIFGKLEILNGADDDDDDDEGHGADGELTDAQKYIFGKLEILNEADEDVDDDEGHTIVVDSENGSILRMVAGQKFIYEGGEISLVMPDEDEQQDNDADQLENGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFRVKSVSSATQREPLQIVAQDGNVFKCLLCEKNDETPPSVEDADTMMRHLKTVHDARIYLCRFCGAVMRRRTEYATHIASHAGDRAGGARVSHRCADCGKSYSSRTLLAEHANVHSGARPHQCGVCGKAFASKYTHQAHLKTHAVRPRPYKCSQCGKSFLTQQNLHQHEKTHSGVKDFVCNICNKAFSTQHNLEVHGVVHSGNKAFVCSVCGKAFARRAELRDHMRIHTGERPFSCDICGARFTQRSNLHSHRRATHFDDKRYHCEQCPKRFKRRRLLEYHIKASHTGERPLKCGICQLSFVYPEHYKKHVRIHSGERPYVCEICGKSFNSRDNRNTHRFVHSDKKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHKKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHKKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHKKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHKKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHKKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHKKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHKKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHKKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHKKPYECVACGAGYMRKQLLYAHMNTSVRITTQHNTTHKKPYECVACGAGYMRKQLLYAHMRRVRRRLHAQTAALRAHEHQRTYHNTTQHNTQEALRVRRVRRRLHAQTAALRAHEHQRTYHNTTQHNTQEALRGHLAESIVVNQPRVIKVTENNQPTEITHIEAKNSKFESIFDTSELEASVKSVVKSEAEVNLADAKFYITEDKKLILQDSDKATLNLMQEGDESTLLTIHNIGERAEGTILEAVDVDQLGDQAEIVANDENGGMVRLIQIKLPDGNNGWVAINR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -