Lwla020874.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388022.1:42075007-42082451[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4e-07 0.00022 21.5 0.0 2 37 13 49 12 54 0.91 2 2 5.9 2.5e+03 -1.0 0.1 17 25 107 115 106 115 0.87
Sequence Information
- Coding Sequence
- ATGGATGACCCCAACAAGAAGAACAGAAAATACTCGGAGACCGATCTCAAAACCGCTGTTGAAAATGTTTTGAGTTCAACAATGACAGTTTACAGAGCTTCGAAGGAGTTTAAGATTCCATGGTCGACATTAAAAGAGAATGTGACGAAGTACAAAACTCTACGAGAGGGGGGTAATCAAGATGCACAGATCGTAATGTCCAAAATAGGAAGGCCGTTTGCGTTATCTGTTGAAATAGAACAAAAGTTACTGGCCTATATTATTGAGATGCAAGAACGTGGTTTTGGCCTTACAGTTACCAAAATAAAGCAAATAGCATTATCTTTAGCAAAAGCTGCGAACATTTGCTGCACATTAAATGACAAAAAGGGATCTGCAGGTTGGAATTGGTGGGTGAAGTATAAAGAACGCTACGGGTTGTCTTTGCGAACACCGGAAAATCTTTCAGCAGAGGAAATCGTATATTGCAACATTGACCAAGAAAATGGGTCCCTGGAGACAGATTACCTTGTAGATCTTCATTCAGCGTGTTCTCCATTAGAATGTGAAGAAAATGGATGTCTAAGAACAAGTGACTCTCTATGTGATCCTCTTCATTCAGCGGGTTTTCAATTTGAATGTGAAGAAAATGGGTCTTTGAAGATAGATGATCCTGTGTGTTATCCTCCTCATCCAGCGGATTCTCAATTTGAATGTGCCAAGCTACCTGTCCAGCTTGAAGAAGACGTAATTATGGATGATGTTCCGGGTCAGAATTCGCCTATCATTTATCAACAAAAAATTAAAATAACTGATAGTACAGATATATTTGAGAACGACAATTCTGCAGAAAAAGAATCCAGCAGGCTCAGAAAAGTGAGAATTCCCTCAAAACGTCCTCATTGTAATGACACGACCTCAACTGCAACTGAATTGGGTATTTCAGACTCTTCCGAACACTGTCCTCAAATTACCCCCATTCAAGAAGTTTCATTTGAAAAAGTTGAACCACTTAAACTAAATAAAACATTTAAAATTCGAATTTTAAATGAAGTTATAATTCCAGCTCCGGTACCTAAACAAAACTTCACTGTTCATTTAGATAAGATTTTAAAAGTGCCCAAGTTAGAGCAGAATCAAAATAAAAAAAAGAGAAAGACCGTCCCTCATGCGCGATGTTTAACTCCTATGGCTGACAAGGACCTAAACGACGCTACTGTTCCTAGCACGTCAAAATCTGAATCAAAAGTGAAACGAAGTAAGAGAGCAAATAAAAATAATACTGCACCTGCGAAGAAGAAAAATAGAACTGAAGACGACGATTGGCTATGTGAAATATGTAAGAGATGGTACTCAGAAGATGCAGCTTCTAAAAATGGAGCAGACTGGATTTCTTGTTCCTTCTGCTCTAAAACGTACCACGTACATTGCCAAAGTCAAGAATTTGAGGCTATTGAGACGATTTTTAAGTGTGATATGTGTTGCGCCGAAGAATAA
- Protein Sequence
- MDDPNKKNRKYSETDLKTAVENVLSSTMTVYRASKEFKIPWSTLKENVTKYKTLREGGNQDAQIVMSKIGRPFALSVEIEQKLLAYIIEMQERGFGLTVTKIKQIALSLAKAANICCTLNDKKGSAGWNWWVKYKERYGLSLRTPENLSAEEIVYCNIDQENGSLETDYLVDLHSACSPLECEENGCLRTSDSLCDPLHSAGFQFECEENGSLKIDDPVCYPPHPADSQFECAKLPVQLEEDVIMDDVPGQNSPIIYQQKIKITDSTDIFENDNSAEKESSRLRKVRIPSKRPHCNDTTSTATELGISDSSEHCPQITPIQEVSFEKVEPLKLNKTFKIRILNEVIIPAPVPKQNFTVHLDKILKVPKLEQNQNKKKRKTVPHARCLTPMADKDLNDATVPSTSKSESKVKRSKRANKNNTAPAKKKNRTEDDDWLCEICKRWYSEDAASKNGADWISCSFCSKTYHVHCQSQEFEAIETIFKCDMCCAEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -