Lwla008375.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388049.1:6642434-6645235[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-07 0.00018 21.8 0.0 4 37 16 50 15 57 0.85 2 2 9.6 4e+03 -1.7 0.0 2 12 457 467 456 471 0.85
Sequence Information
- Coding Sequence
- ATGCCAAAATATAAACGAATAAAAGAGACGAAGTATTCATTAGCTGATCTAATAGAAGCTGTCGAAAACGTACGACAAAAAAAAATTAATAGCTACCAAGCCTCCTTAAAATACGGAATACCAAGGTCAACCATTATTCACCGTTTATACGGAACACGCGGTGCCAAACAGCCAACGCCTGGCAGACCTACTGAATTGTCAAAAGAGTGGGAAACTAAAGTAGCTTCTAATCTCCATGTGATGGAAAAATGTGGGTATCCATTAACCTCCAAGGAAGTAAAAATATTGATATCTGATTATATTCGAAGGAACGGAATCGTTACGAGATTTAAAGATAACTATCCTGGGAAGGAATGGTTTAGAGGATTTAAAAAACGAAACAAATTAAGTTTGAAAAAGCCGCAGTCTGTAGAAATAGCTCGAAAAAAAGCATGTGATCCTTTCATAGTTAACGATTATTTCGATATGTTACAACGAACAATACAAGAGTGTGGTTTGGCTGACAAACCGCAATGTATATATAATTTGGATGAAACCGGCTTTTGTAGTGACCCCACCAAAACTAAAGTTGTGGGTCTGATGGGGTTTCCCTCAACTAGAACGACAGGCTCTCCTGGGAGGAATAACACCACTGTGCTCTTAGCTACGAATGCACTTGGCAAAAAGATCCCACCCTTAATAATATTTCAAGGGAAACATCTGTGGAGCGAGTGGCTGTTTAAAAATGATAACATTCATACAGCTTACGCTGTCAGTAAAAAAGGGTGGATGGAGACCACCATTTTCGAACAATACATCAAAGCCGTTTTTTTGCCAGCTATCGGAGAAGAACGACCAGTCTTATTGGTCTATGATGGTCATAAGACACATGTAGATTTGAATGTCATAGACCTTCTAGTTGCCGAAAACATTACGGTTCTTAAACTGCCGGCTCACTCATCTCACATACTGCAGCCATTAGACTGTAGTACAATGAAACCTATGAAAGACAAATGGGACAGCGAACTTGTGAAATGGCAAAGACTCCATGTGGGAGCAAAACTCCCAAAACAAGAATTTGCCAGAATCATAACTAATATATGGGATGATTTAAATCCTGTTATCATTCAAAATGGCTTTAGGAAAGCGGGCATATGCCCTTTGAACAAAGATGCAATCCCAAAAGAAAAATTCGACAGTCTGGCATGGTCAAGATGGGAAGAACACCAGCAGCAAAAAAAAAAACAGCTTCGTAATGATACTGATCACAATGGTGAAGAAAATGTTGAAGGAAGTCGCACCAAGAAAGATAACTGTCAGAGAGAACATAAAGTACCAACACTAATAAGTGTATGCCTTAAAACAATTAACAGTGAGATACGACGATTGCCAGACGAAATTGATAAGGCTATTGCAAACATTACACGGGATATGAAGAAAAAGCTACCGACAGAAAATGATACAAAGGCTGATATGAACACGTACTCAGAGCTACTATTAAAAACTATTTCACGTAACGACATACCTAAAACTTCAAAGAAACGGATAAGTCAAGGAAGCGAAATACTAACTTACAAAGATGCACTTCATCGTCTGAAAAATGAGAAAGAGAAAAAGGAAAAAGCAGAAGAAACTAAACGGCTAAATAAACTGAAAAGAGCAAGTTATAATGAGAACAAAAAACCACTAATAAATAAGTCCAAAGCAAAGAAAAATAAAAGGAAAAAGACCTTAGACTCAGACAGTGAGAGTGATTGTTCATATACTTCAATGAATTCTTCAGAAGATGAAGGCCCTGAAGTTTTTTTTCAAAATATTTTGGAAGAAAGCATTGATGAAGATTTGCAGGAGCCATTACCATTATCTACTAGACAAGGACAAGAAGAAAATAGACCTAAAATAAAAAGTGAAAGATTAAATAAAGTGCAGAAAAAAACATTAAGGCAGACTGAAAAGGCGGGTAGTTTATATGAACATTCTACTGTTTTGGAAGAAAGGTTTGACGAAGATTTTGATGATCCGTTACCATCTACTTCTAAAGGACAAAAACAAAAGACACCTAAAATAAAAAACGAAAGAGAGAAGGAAAGAAAGACTTACACTGCCAAGAAGAAAATATTTACACAAAAGGAAAATAAAATGCCACAACCACAAGCATCTGAGGTAAAAAAAAAAGATCTCGACGTGGGTGACTTCATTTTGGCTGGATTTCGGTCGACTAAAGGCAAAAGGACGTATAAATACGTTTGTCTTATTGAGGATATTAACCAAGAAAAACTTGTAGTCAAAGGACTCAAATCTAAAAAAGATAATAGAGAATTCAAGTTCGTTGAAAACGACATTTCCATAATAGATATAGAAGATGTGATTTCATATTTGCCCAACGCCGTGTTAAATAAACAAAAAGATACAGTCATATTTCCTTTTAAAGTAGGGGTATTTGAATGTAAATGA
- Protein Sequence
- MPKYKRIKETKYSLADLIEAVENVRQKKINSYQASLKYGIPRSTIIHRLYGTRGAKQPTPGRPTELSKEWETKVASNLHVMEKCGYPLTSKEVKILISDYIRRNGIVTRFKDNYPGKEWFRGFKKRNKLSLKKPQSVEIARKKACDPFIVNDYFDMLQRTIQECGLADKPQCIYNLDETGFCSDPTKTKVVGLMGFPSTRTTGSPGRNNTTVLLATNALGKKIPPLIIFQGKHLWSEWLFKNDNIHTAYAVSKKGWMETTIFEQYIKAVFLPAIGEERPVLLVYDGHKTHVDLNVIDLLVAENITVLKLPAHSSHILQPLDCSTMKPMKDKWDSELVKWQRLHVGAKLPKQEFARIITNIWDDLNPVIIQNGFRKAGICPLNKDAIPKEKFDSLAWSRWEEHQQQKKKQLRNDTDHNGEENVEGSRTKKDNCQREHKVPTLISVCLKTINSEIRRLPDEIDKAIANITRDMKKKLPTENDTKADMNTYSELLLKTISRNDIPKTSKKRISQGSEILTYKDALHRLKNEKEKKEKAEETKRLNKLKRASYNENKKPLINKSKAKKNKRKKTLDSDSESDCSYTSMNSSEDEGPEVFFQNILEESIDEDLQEPLPLSTRQGQEENRPKIKSERLNKVQKKTLRQTEKAGSLYEHSTVLEERFDEDFDDPLPSTSKGQKQKTPKIKNEREKERKTYTAKKKIFTQKENKMPQPQASEVKKKDLDVGDFILAGFRSTKGKRTYKYVCLIEDINQEKLVVKGLKSKKDNREFKFVENDISIIDIEDVISYLPNAVLNKQKDTVIFPFKVGVFECK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00237477;
- 90% Identity
- iTF_00449025; iTF_01153884; iTF_00726301;
- 80% Identity
- -