Lwla019942.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388022.1:12047637-12048946[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-07 7.5e-05 23.0 0.0 1 38 12 50 12 55 0.91 2 2 5.9 2.4e+03 -1.0 0.3 17 24 106 113 105 114 0.86
Sequence Information
- Coding Sequence
- ATGGATGACCCCAACAAGAAGAACAGAAAATACTCGGAGACCGATCTCAAAACCGCTGTTGAAAATGTTTTGAGTTCAACAATGACAGTTTACAGAGCTTCGAAGGAGTTTAAGATTCCATGGTCGACATTAAAAGAGAATGTGACGAAGTACAAAACTCTACGAGAGGGTAATCAAGATGCACAGATCATAATGTCCAAGATAGGAAGGCCGTTTGCGTTACCTGTTGAAATAGAACAAAAGTTACTGGCCTATATTATTGAGATGCAAGAACGTGGTTTTGGTCTTACAGTTACCAAAATAAAGCAAATAGCATTATCTTTAGCAAAAGCTGCGAACAGCTGCACATTCAATGACAAAAAGGGATCTGCAGGTTGGAATTGTGTTCATCGACCTCTGAAAGTAGCCTGGAGGACAATAATCGAAACCCACAAAATGGAAAATCCTTACCACATCCCAAACCGCTATGATTTTCATAAATTCTTTACCCCTGCATTTGAAAAAAGCTTCACGCCATCAAACATACGAGCTGGGTTCAAAAAAGCGGGTATCTATCCGTTAAACAGAATAGCTGTGAATCCACTGGCACTTGCTCCATCAAAGTTGACAGACAAACCATTTCCAGAATCGGCAGAAGAGGTCACACTTCATAAAGATGAACAAACAACAAACTCAAATTTTAGAGGAAATCGTATATTGCAACATTGA
- Protein Sequence
- MDDPNKKNRKYSETDLKTAVENVLSSTMTVYRASKEFKIPWSTLKENVTKYKTLREGNQDAQIIMSKIGRPFALPVEIEQKLLAYIIEMQERGFGLTVTKIKQIALSLAKAANSCTFNDKKGSAGWNCVHRPLKVAWRTIIETHKMENPYHIPNRYDFHKFFTPAFEKSFTPSNIRAGFKKAGIYPLNRIAVNPLALAPSKLTDKPFPESAEEVTLHKDEQTTNSNFRGNRILQH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -