Lwla019406.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388036.1:23007497-23008066[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-09 1.3e-06 28.6 0.0 3 40 16 53 14 56 0.93
Sequence Information
- Coding Sequence
- ATGTCTACGAAAAAACCCAAAAGAAAAACTGTGTCTTACAGTGCTGAAACACTACAGAGGGCATTAAAAGAAATCCGCGAACAACAAATTCCGATCCGAGAAGCATCTCGTAAATTCAATATTCCAAGATGCACGATTCAAGATCGGTTGAGTGGCAGAAGGACGGACGAAATAAAAAAACATGGCCCCGAGCCAGTGCTGGGAGAAGAAGGAGAGAAAAAGGTTGTATATTGGCTTATAAATATAGCCAAATGTGGTTTTCCCGTAAAGAAGCAAGAACTGTTAGATACGGTTCAAAAAATTTTCAAAGATTTAAAAAAGCCGAATCCTTTTAAGGATGATCGTCCTGGGCAGACGTGGTATCATAACTTTTTAAAACGACATCCCGAGATATCAGTTCGATCAGCAGAAGGTATCAACAAAGCTCGCGCTAGGGTGACCGAAGAGTCGATTCGACTGTGGTTCCGTGAACTGAAAATGTTTCTAGAGCAAGAGGGGCATTTAGACATCCTTGAAGAACCCGAAAGGATGTTTAACGGCGATGAAATCCCGCTGATCCCGCCCCAGTGA
- Protein Sequence
- MSTKKPKRKTVSYSAETLQRALKEIREQQIPIREASRKFNIPRCTIQDRLSGRRTDEIKKHGPEPVLGEEGEKKVVYWLINIAKCGFPVKKQELLDTVQKIFKDLKKPNPFKDDRPGQTWYHNFLKRHPEISVRSAEGINKARARVTEESIRLWFRELKMFLEQEGHLDILEEPERMFNGDEIPLIPPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01209172;
- 90% Identity
- iTF_00448985;
- 80% Identity
- -