Lwla012402.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- clz9
- Assembly
- GCA_947578705.1
- Location
- OX388051.1:13930258-13933140[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-10 1.7e-07 31.5 0.1 2 40 16 55 15 59 0.88 2 2 3.1 1.3e+03 -0.1 0.1 25 40 868 884 867 887 0.81
Sequence Information
- Coding Sequence
- ATGGTAAGCAattacaaaagaaaaacaagcaaaggctcatattcgaaagaaaagttacaagaggcagcacaagctgttagagatggccgtttgagtggttataaagctgcgcaaatttataatatccctcgcatgactattatggaccatgcgaaaaacaggagatttaaatcgaattctcttggtagaaacactgctctgacgaccgacgttgaaacaaaattagcttcgttactacattcaatggaaaaatatggatttggtttaacaaaaaaagaggtcctcgaaatggtcggccaatatgtacgacgtaatcatctatcgactcctttcaaaaacggaactccaggtccagcatggtttacaaaattcaaagaacgacacaatttatccgtaaagaaaccccaggctgtcgaatacgcgcgtaagaaagccatagatcctttcatagtttacccatattttgaattgctttataatacattggtacatttaaatttattggacaaaccatccgccatctggaatttagatgaaactagtttttcgaatgatcccgaaaaatcaaaaattgttggcgcgaaaggacacgccgcgacaagagtaatcgcatcacctggtagagaaaacaccactgtgttgcttggagccagtgcgctaggagaaaaaacacctccgcttataatttacaagggtaaaaaaggaagggatgaatggacatctccggatgcttattccggcacatcctatgctgccacgaagaagggatggatggagacagatgtctttgaaatgtattttaaaaaagtatacctgccagctgttggagatcaacgtccgattcttcttatttatgacggacatgctactcatgtggggttaaacataattgaggaagcacgtaaagcagatataacaatacttaagctacctccacatactagtcacatcttacaaccgctagatgttgcggtcatgaaatcatttaaagctcgacgggatccaatgctcgtaaaatggcagcgttcaaatgtcggagtgaagttgccaaagaaagagtttgcgaggttaattggagtggtttgggctgaaattgatagtcaagttttaaaaaatggcttccgtaaggctggaatttacccgttcaaTTCTGAAGAAATCAAAGAAAGTTTATTTGATCCGTTAAAGTTAAAGCGCTGGAAAGAACATCAAGCTCTTAAGTCACAAGAAAGACGTAAATTTGACTACAATACTCCAGAAAGGCATGAAAATTACCTAAATATTCCAGAAGAACTAGTTTGTTGTAATGATGAATCTGTTTTTGTTGCTAGAACAAACCATCCACAAAGTCTGTTTTCATTAGCCTTCAACTGCACAATAGATGTAGTTGGTATACATTCTCATCATAGTAGCGATCACTGTTCTGCAAATTGTAACACCGACAACCGTATTCAGAATAATGATTTGGAGACAGAGGATGCAAAAATTAAAATAAAAGAAAACCAAGTTCTAGAATCAGAATCTCATCAAAGACTGGAACAAGAATCTATCGATTCCAATAAAGATTTGAAATATGTTGGTAATAGTAGTAATAGGATCCAGATTTTAGAAAACAGACTAATCACCTTTGAAGAACTACTATTGATGCAAGTTAAAGCTGGAGCTCATTTAAAAGTCAAACGGCAAAAAATTGCTCCAGGAGCTGAAGTTATAACACATGATGATGTTGTTAAGCGTAAAATAGAAGAAAAAAATAAAAAAGAACCGCAGACAAAGAAAAATATGACTATGGTAAAAAAACAACCAAAGACTAATCTAAGCAAAAAGGAACAAAAGAATAAACAAAGAACAGTCCAATCCATCGAATCAACATCTGATATTGATAGTGACGACGATGCAGCTATGACACCAAAGCGAGATGCGTTGTTTTATGGTCCATCTACTTCAACAGGAAAGATAGGTAAACAAAGCAATACGAAAAGAAAGCGTCTGCCATCAATTGACTCCATAACTAGTATTTCTGATGTGATGAGTCTATACAGCGATACGAACATCAGCGTTAAAACTCTGTTCGACGATGATCTCGATAGTGATTGTTTTGCAGAAAATAATTTAAATCTGAATCAAGGAAACCCTAGTAACAATGATATCTTACAGCTTAACGTAAAAGGTAACCTGCAAAAGAAAGCTCCAAAAAATAAAAATAAAGAACTGCAACCAAAAAACAATAGGACTATGATAAAAAAACAACCAAAGATTACTAACTTAAACAAAAAAGGAAAAAAGAGGACGCAAGTAAAAAACCTTTCCAACGAAAGGACACCTGAAGTTACGAGTGATGACGATTTGAGCACCACGATAAGTGATCTTGAAATTGACAAAGAAAATTCGGTTCCTGTATCACATGCGGACATGGCATCAAATGAAAATAAATCACTTTCCTGTCCAACTACTTTAACAGGAAAGACGGGTATAAATAGAGATGTGAAACAAAACCAAATGTCATCAATTGATTCCGCGACTATTGTTTCTAATAAAATGAATATATTTAGCAATATGAATTTAGAAAATATAACTGACAATGACATCTTACAACACAGTAATTACAGTATAAATGATTCCGTGCTTGTGAGATACCATATGAGACAAAAGTGGACCTATTATATTGGATTTATAGAGGATATCAAAGTAATGGATGACGAAACATATTATTTTATAGACTTCTTAAAAACTGTGAAGAAACCACAACTCGTTTTTAGAGTGGCCAAGAGAAAAGATCGTGATAATGTACCCGCTCTGTCTATAGTTAAAAAGATCGAAATAGAAACTGTTGATGCAAAACAATATAACTTATGCAATATTGAAGATGAGGTATATTTTTAA
- Protein Sequence
- MVSNYKRKTSKGSYSKEKLQEAAQAVRDGRLSGYKAAQIYNIPRMTIMDHAKNRRFKSNSLGRNTALTTDVETKLASLLHSMEKYGFGLTKKEVLEMVGQYVRRNHLSTPFKNGTPGPAWFTKFKERHNLSVKKPQAVEYARKKAIDPFIVYPYFELLYNTLVHLNLLDKPSAIWNLDETSFSNDPEKSKIVGAKGHAATRVIASPGRENTTVLLGASALGEKTPPLIIYKGKKGRDEWTSPDAYSGTSYAATKKGWMETDVFEMYFKKVYLPAVGDQRPILLIYDGHATHVGLNIIEEARKADITILKLPPHTSHILQPLDVAVMKSFKARRDPMLVKWQRSNVGVKLPKKEFARLIGVVWAEIDSQVLKNGFRKAGIYPFNSEEIKESLFDPLKLKRWKEHQALKSQERRKFDYNTPERHENYLNIPEELVCCNDESVFVARTNHPQSLFSLAFNCTIDVVGIHSHHSSDHCSANCNTDNRIQNNDLETEDAKIKIKENQVLESESHQRLEQESIDSNKDLKYVGNSSNRIQILENRLITFEELLLMQVKAGAHLKVKRQKIAPGAEVITHDDVVKRKIEEKNKKEPQTKKNMTMVKKQPKTNLSKKEQKNKQRTVQSIESTSDIDSDDDAAMTPKRDALFYGPSTSTGKIGKQSNTKRKRLPSIDSITSISDVMSLYSDTNISVKTLFDDDLDSDCFAENNLNLNQGNPSNNDILQLNVKGNLQKKAPKNKNKELQPKNNRTMIKKQPKITNLNKKGKKRTQVKNLSNERTPEVTSDDDLSTTISDLEIDKENSVPVSHADMASNENKSLSCPTTLTGKTGINRDVKQNQMSSIDSATIVSNKMNIFSNMNLENITDNDILQHSNYSINDSVLVRYHMRQKWTYYIGFIEDIKVMDDETYYFIDFLKTVKKPQLVFRVAKRKDRDNVPALSIVKKIEIETVDAKQYNLCNIEDEVYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01363039;
- 90% Identity
- -
- 80% Identity
- -