Lwla009403.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388031.1:21600486-21602504[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7e-10 2.9e-07 30.8 0.0 1 42 18 59 18 62 0.89 2 3 4.2 1.7e+03 -0.5 0.0 13 22 132 141 132 144 0.88 3 3 4.9 2e+03 -0.7 0.1 14 23 142 150 137 152 0.73
Sequence Information
- Coding Sequence
- ATGCCTCGCAAATGTATTAGAAAGGTTGGAGTTCGTCCACGAGCTGAATGGACGCAAGAGGCATTAATAGCTGCAATAGACGAAATTTCGAGAGGCATTCTAGGAATTAACGAAATATCTCGTAGATATGGGATTCCCTCAAGAACATTGAGGCGAAGATTCGCTAACAAAAATACGGAAAAACTGACATTAGGAAAACACCCACTTCTTGATTTTGTAAACGAAAAACGTTTGGTGAGTCATATACAGAAATTAGAAAAAGCTGGTTTCCCTCCAACCCGGGACATGATTCGAAGATTAGCTTTCGAGTTTGCTGAAAAACTGGGTAAAGAAACCAATTTTAATAAGGAGACTCGAAAGGCTGGGCCGCATTGGTTAAGATCATTTTTAGAACGTAATAAAGAGTTAAGTATTCGTCAGGCAGAAGGCTTATCAGTTGCAAGAGCACAGGGATTAAATCGAGATGAAGTTAACAAAATGTTTGAACTACTGCTTAAAGTAATGACAGAGCATGACTTACTGGATAAACCGGATAGGATTTACAATGTAGATGAAACAGGTGTCCAGTTAAATAACTCTACTGGAAAAGTCATAGCTACAAGAGGCGCAAGAGTAGTCCATTCTATAACTTCTGCTGAAAAAGGTGAAACTTTATCGAATAATAATATTATAAACATTGAGGAACTAGAAACACCAAGCAAATATTTGCAAGAATCTTCGCCGGTGCCAATTGTTCCGGTTCCATTTCATAAGAGAGGAAAACAATCAGCTGCAATTTTAAACACTAAAGAAAATATTGAAGCGAAGAAATCTAAAGTTAAAGGTAAAGCTACTCCAGGAATACGTTGTAAAAATAAATGTCGAACAGCTAAAGCTGATGTACAGAAGAAAGTGTTACGAACTGCAGTCAAGTTTCCAAAGAAGATTCCAGACAAATGTATTAAGAAAAGAAAAGGCATTAGAGAATCTAGTGATGAAATGACCATCTCGGATATTTCTAATGAATCTGATTCAGATATCGCCCAGGCGAGAGCAGGTGAAATTGTCCTGCATAAAAAAAACAGAGATCTCAAACTAAGATTCAGAGTAAAGTTCCAGCAAAAAATAATAAGAAAAGACGAATAG
- Protein Sequence
- MPRKCIRKVGVRPRAEWTQEALIAAIDEISRGILGINEISRRYGIPSRTLRRRFANKNTEKLTLGKHPLLDFVNEKRLVSHIQKLEKAGFPPTRDMIRRLAFEFAEKLGKETNFNKETRKAGPHWLRSFLERNKELSIRQAEGLSVARAQGLNRDEVNKMFELLLKVMTEHDLLDKPDRIYNVDETGVQLNNSTGKVIATRGARVVHSITSAEKGETLSNNNIINIEELETPSKYLQESSPVPIVPVPFHKRGKQSAAILNTKENIEAKKSKVKGKATPGIRCKNKCRTAKADVQKKVLRTAVKFPKKIPDKCIKKRKGIRESSDEMTISDISNESDSDIAQARAGEIVLHKKNRDLKLRFRVKFQQKIIRKDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00851713;
- 90% Identity
- iTF_00851713;
- 80% Identity
- -