Lole021136.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- azf1
- Assembly
- GCA_950371165.1
- Location
- OX493396.1:25907133-25916503[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 4.4e-05 0.0059 18.4 5.6 1 23 145 167 145 167 0.98 2 23 1.5e-05 0.002 19.9 0.1 3 23 200 222 199 222 0.94 3 23 8.5e-08 1.1e-05 27.0 1.2 1 23 228 250 228 250 0.98 4 23 0.0013 0.18 13.8 0.2 1 23 256 277 256 277 0.88 5 23 0.011 1.4 10.9 0.1 3 23 284 306 282 306 0.89 6 23 0.47 63 5.7 5.6 3 23 325 346 323 346 0.95 7 23 4.8 6.5e+02 2.6 9.5 1 23 355 378 353 378 0.94 8 23 5.2 7e+02 2.5 10.3 1 23 387 410 385 410 0.94 9 23 5.2 7e+02 2.5 10.3 1 23 419 442 417 442 0.94 10 23 5.2 7e+02 2.5 10.3 1 23 451 474 449 474 0.94 11 23 5.2 7e+02 2.5 10.3 1 23 483 506 481 506 0.94 12 23 5.2 7e+02 2.5 10.3 1 23 515 538 513 538 0.94 13 23 5.2 7e+02 2.5 10.3 1 23 547 570 545 570 0.94 14 23 5.2 7e+02 2.5 10.3 1 23 724 747 722 747 0.94 15 23 5.2 7e+02 2.5 10.3 1 23 756 779 754 779 0.94 16 23 5.2 7e+02 2.5 10.3 1 23 837 860 835 860 0.94 17 23 5.2 7e+02 2.5 10.3 1 23 869 892 867 892 0.94 18 23 5.2 7e+02 2.5 10.3 1 23 901 924 899 924 0.94 19 23 5.2 7e+02 2.5 10.3 1 23 1031 1054 1029 1054 0.94 20 23 5.2 7e+02 2.5 10.3 1 23 1063 1086 1061 1086 0.94 21 23 5.2 7e+02 2.5 10.3 1 23 1095 1118 1093 1118 0.94 22 23 5.2 7e+02 2.5 10.3 1 23 1127 1150 1125 1150 0.94 23 23 5.2 7e+02 2.5 10.3 1 23 1176 1199 1174 1199 0.94
Sequence Information
- Coding Sequence
- ATGGATGAGTTCAGTGACGAGTCAATGTGTAGAATATGTTTCAAGAAACAAGATACAGTGTTCTCGTTGTTTCGTAAACGAAAAGGCCTGTCTCCTTGCGAGAAGTTGAACAAAATTGGTGTAAAGGCTGATGTGAACGACACGGGGCCTGCTTGCATTTGTTGTGACTGTCTCACAGAGTTGGAGACTACGGTTCACTTTCTAGAAAAATGTGAGAAGTCTAACCAAATACTCGCTGAACACTTGGGCAATGTGTTTAAAGACAGTAACGCTCTTCACTTTGAAAGTAGAGTAGTAGATGTTAGCCAGGACGAGTGTGAGTTTAACATGAAGCAGGAGGTGAAAAGTGATGAGGAGTTAGTGGATGAGGAGGCTCACTGTGAGGAGTGTGGGTCCCGCCGACGTTGCCGGCACTGGGCGCCGCCCACCACGCACACCTGCCCCAAGTGCCAGAAAGTGTTCAACAGGAAGTTCAACTTTAAATTACATCTGCAGCGCCACAGCCGCGAGCGTCTGTGGGCGTGCGCGCGCTGCGGCGCGGGGGCGGTGTCGCGCTGGCTGGCGGCGCGCCACTGCGGCCCGCGCGCGCGACGCGCCTGCCCCTTGCCCGGCTGCGGCAAGACCTACACCTCCAGCACCAACCTCAACGTGCATCTCAGGGCACATAGCGGCGACAGACCGTTCGAGTGCAATGATTGTGGAAGAAAGTTCTCCAGCAAGACTACTCTCCAGAACCATATTAGGATACACACAGGAGTTCTCCCGTACATCTGCCCTATATGCGGCAAGCAGTTCCGCACGAATAAGCTGTCGGCGCACCTGGCCCAGCACGGCGAGCCGCGCCACGCGTGCGCCTGGCAGGGCTGCGCCAAGCGCTTTGTGTCGGCCGCCGCGCTACAGCGACACGCGCGCGCGCACAGCGGGGGGGCAGGTGGGGGGGCAGGCGGGCCGCGCGCGCCCCCCCCGCACCTCTGTGCGCTGTGCCCCGCCAGATACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGGCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACACGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACCTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACACGCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACACGCAGGTTGGTACACAAACGTGTCATCACTGTGCCCTGTGCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACCTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACACGCAGGTACCACCACAAGCAGTCCTTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACACGCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTACCACCACAAGCAGTCCCTCAACAACATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGATTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGATTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGATTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGGTACCACCACAAGCAGTCCCTCAACAACATGTGAGGAAGCAACACGCGCAGGTTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATGTGAGGAAGCAACACGCGCAGATTGGTACACAAACGTGTCATCACTGTGCGCTGTGCCCCGCCAGGTACCACCACAAGCAGTCCCTCAACAAGCATCACCCCGTGCCGGCGGCAGAAGCAGAAGCCAACGGCATCACCAAAGAGTTAGAATGTGATAGTAGTAGAGTAGTCGGCAGTCAGCACGAGATGACAATTAGTTAG
- Protein Sequence
- MDEFSDESMCRICFKKQDTVFSLFRKRKGLSPCEKLNKIGVKADVNDTGPACICCDCLTELETTVHFLEKCEKSNQILAEHLGNVFKDSNALHFESRVVDVSQDECEFNMKQEVKSDEELVDEEAHCEECGSRRRCRHWAPPTTHTCPKCQKVFNRKFNFKLHLQRHSRERLWACARCGAGAVSRWLAARHCGPRARRACPLPGCGKTYTSSTNLNVHLRAHSGDRPFECNDCGRKFSSKTTLQNHIRIHTGVLPYICPICGKQFRTNKLSAHLAQHGEPRHACAWQGCAKRFVSAAALQRHARAHSGGAGGGAGGPRAPPPHLCALCPARYHHKQSLNKHVRKQHAQVGTQTCHHCALCPARYHHKQALNKHVRKQHAQVGTQTCHHCALCPARYHHKQSLNKHVRKQHTQVGTQTCHHCALCPARYHHKQSLNKHVRKQHAQVGTQTCHHCALCPARYHHKQSLNKHVRKQHAQVGTQTCHHCALCPARYHHKQSLNKHVRKQHAQVGTQTCHHCALCPARYHHKQSLNKHVRKQHAQVGTQTCHHCALCPARYHHKQSLNKHVRKQHTQVPPQAVPQQACEEATRAGWYTNVSSLCAVPRQVPPQAVPQQACEEATRAGWYTNVSSLCAVPRQVPPQAVPQQACEEATRAGWYTNVSSLCAVPRQVPPQAVPQQACEEATHAGWYTNVSSLCPVPARYHHKQSLNKHVRKQHAQVGTQTCHHCALCPARYHHKQSLNKHVRKQHAQVGTQTCHHCALCPARYHHKQSLNKHVRKQHTQVPPQAVLQQACEEATRAGWYTNVSSLCAVPARYHHKQSLNKHVRKQHAQVGTQTCHHCALCPARYHHKQSLNKHVRKQHAQVGTQTCHHCALCPARYHHKQSLNKHVRKQHAQVGTQTCHHCALCPARYHHKQSLNKHVRKQHTQVPPQAVPQQACEEATRAGWYTNVSSLCAVPRQVPPQAVPQQACEEATRAGWYTNVSSLCAVPARYHHKQSLNKHVRKQHAQVPPQAVPQQHVRKQHAQVGTQTCHHCALCPARYHHKQSLNKHVRKQHAQIGTQTCHHCALCPARYHHKQSLNKHVRKQHAQIGTQTCHHCALCPARYHHKQSLNKHVRKQHAQIGTQTCHHCALCPARYHHKQSLNKHVRKQHAQVPPQAVPQQHVRKQHAQVGTQTCHHCALCPARYHHKQSLNKHVRKQHAQIGTQTCHHCALCPARYHHKQSLNKHHPVPAAEAEANGITKELECDSSRVVGSQHEMTIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -