Basic Information

Insect: Lacanobia oleracea
Gene Symbol: ush
Assembly: GCA_950371165.1
Location: OX493393.1:23081945-23088659[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0089 1.2 11.2 0.2 1 20 188 207 188 209 0.94

2 9 0.00011 0.015 17.2 0.9 1 23 246 268 246 268 0.98

3 9 0.068 9.2 8.4 0.6 3 21 299 317 298 318 0.92

4 9 0.025 3.3 9.8 3.9 2 21 561 580 560 581 0.95

5 9 0.0086 1.1 11.2 0.2 3 20 610 627 608 629 0.91

6 9 2.2 2.9e+02 3.7 0.0 2 23 657 678 656 678 0.93

7 9 0.011 1.4 10.9 1.3 1 23 684 706 684 706 0.99

8 9 0.56 75 5.5 0.7 1 23 745 768 745 768 0.95

9 9 0.23 31 6.7 0.7 2 20 804 822 804 824 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0089	1.2	11.2	0.2	1	20	188	207	188	209	0.94
2	9	0.00011	0.015	17.2	0.9	1	23	246	268	246	268	0.98
3	9	0.068	9.2	8.4	0.6	3	21	299	317	298	318	0.92
4	9	0.025	3.3	9.8	3.9	2	21	561	580	560	581	0.95
5	9	0.0086	1.1	11.2	0.2	3	20	610	627	608	629	0.91
6	9	2.2	2.9e+02	3.7	0.0	2	23	657	678	656	678	0.93
7	9	0.011	1.4	10.9	1.3	1	23	684	706	684	706	0.99
8	9	0.56	75	5.5	0.7	1	23	745	768	745	768	0.95
9	9	0.23	31	6.7	0.7	2	20	804	822	804	824	0.92

Sequence Information

Coding Sequence: ATGCATATCAACATACCCGTAAAGAGCCTAAAAGGTGTGGACCTTTCAACTACCAAACTAAAATTGAAATATCGTATCGTATTTCGCGACGAAACGGACACTTGTCCCACAGTCGGACTCGGCACAGCACAGGGCGTAACGATAGCGGAATCGAACCGGCGATATGTTAATGTTTGTCCCATCGTGACGCACGACGCTCATCCTGCCGGACACTTGCGGAAGATCACCAACTTGATACgtGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCGGGAGAACCTCGCACGCCGAGCTCAGAGGGCGAGCGCGCCGCATCCAGCGGGGGCGCCTCGCCCGCTTCTGGAGGCTCGCCCGCCGCGTCGCCGCCGCGCCTGCGCCTCAACACCAGCCTGGCCACAGAccccgcgctggcgccgcagGCCACTACACTGAAGCATGAGCCGCCCTCGCCGTCTCCACCGCCGCCACCTGCTGCGGCCCCACAAGCAAGAGACTACCTCGCCATAACGGCGGCGGCCTTCCCTGGTCTATTCCCTGCAACTGGCCCTCCCAGCTACATTTGCAAGCCATGCGGCATTCGCTACTCGTCTCTCAGTACATTGCAAGCACATCAAGAACACTACTGTTCAAACAGACTGCCGAAACCAGCGGAGCCGAATGCTACGGCCGATCCAGCTGTAGATGAGTCCAGCAGTGAGGCGAAGACCCCTCGCCCTGCTGGCAAGCAATATGCTTGCACCTACTGCTCGTATAGCGCGGATAAGAAAGTTAGCTTGAACCGGCACATGAGGATGCACTCCTCGTCCCCGGTGAGCAGCGGCACCCCAGCGCCGACGCCCACGTCTAACGGAGAAGTCACGGAAGGGCCTCCGGTACAGGACCGCTACTGTGCCGATTGCGATATTCGCTTTAGCTCTATCAAGACTTACCGAGCACATAAACAACACTACTGTAGCACAAGGCAAGTTGTGAAACAAGCGCTAGCTGCGGCTCGGGGTGGTTCGGCGACGTCAGGGTCCGCGCCGCCGTCGCCTGGAGCCACCCCTCCAGCACAAAACCAGAACCAGTACGCACTCGCGTTACCTACAAATCCAATTCTCATCGTGCCCTACTCGTTATTACGGGGCGCTAGTACTCTACCAGGCACGACACTGCCTGATCCAGATACGCCATGCTTTCTTTTACCAAATGGAACATTCCAACCAATCAGTCGGGCACTGTCGAACATGAATGCAGAAGGAAAAGAAAATGAGGTTTTAAAATCTGCGAATCGTCCCCGAGAGCCATCAAGAGACGGTGGTGCGACACCTCTGGATCTCAGCGTACGACGTTCGCCAGAATCTGTGGTGACTGATGAGCATGAAAAAGAGAATCGATTACGGTCTACGACTCCCGAGCAAATCGTGTGCGCTCCATCACTCCCAGGATCTCCAGGTACTCCATCTCCCTCTCGGCGGTCTTCATCGCCTAGCGCAGAAAGTTCACCAAAGCGCCGGAGATTGAACTCTAGGGGGCCGACTCCAAAACCTCCGAGTGTGCCGTCGCCCCCTGAAgagaaatacactccaatagtTCCTCCTGCGATTCTGCCTCCCGCTCTAGCAATGCGGCTCGCATCAGAACTGCCAGTTACTGCGGCATCTCCCCAAGTGCTTGTGAAGCAGGGGGTGTCGAAGTGCAAAGAGTGTAATATTGTGTTTTGTAAGTACGAGAACTACCGGATTCACAAACGGCATTATTGCTCGGCGGGTGGTGGGGATGAGCGCGCAAGTCCTGCTCCTCCAGAGCCTGGTCCACCGCCACAATACCGCCAGTTGATCTGCCTGGCGTGTGGCATCCACTTCAGTTCATTGGACAATCTGACGACTCATCAATCGTTCTACTGCACTAAGCGGGAGACTCGCTCTCCTCGAAGCGTTCCTGAGGCTCCTCGGCCCACTTCTGGGTCTGAGGGGGGGTGGAAGTGTCCCTGCTGCGACGTGGTGTCgccgacggcggcggcggcgcagcgTCACATGGACGCACACGCCGGCGTGAAGGCGTTCCGCTGCACCATCTGTCGGTACCGGGGCAACACACTGCGGGGCATGCGCACTCATATCCGCATGCACTTCAACAACAAGAAACCTGCTGATTTACAGGAGGAGAGCTACATCGCATGCGTTCTCGAAGAGGACAGCCGTGAGGCGACCTCCCCAAGCCCAGCTGTGGGCGGAGAGCGCGTCCACCGCTGCGGCAGCTGTGCCTACACGTCCACATACCGCGGCAACGTCGTCCGCCACGCACGACTCGTCCACGCTACCGACGAGCCAGAGGAAGAACAAACATCTCCCGTTCCTCCTCCCCCAACCACAGTCGACATCAAAAAAGAACCAGACACAGAACTGGAAGAAACCCCCAACTACTGCAAATCTTGCGACATATCGTTCAAGTATGTGAACACCTATAAGGCACACAAGCAGTTTTATTGTACCGCTAACAATCCGGACGCGACGGCTAACAACAACGTACCGACCCCTGCGAGGGTTACTGACACCCCTGTGCTATGA
Protein Sequence: MHINIPVKSLKGVDLSTTKLKLKYRIVFRDETDTCPTVGLGTAQGVTIAESNRRYVNVCPIVTHDAHPAGHLRKITNLIREDEEWGNESEAMPGEPRTPSSEGERAASSGGASPASGGSPAASPPRLRLNTSLATDPALAPQATTLKHEPPSPSPPPPPAAAPQARDYLAITAAAFPGLFPATGPPSYICKPCGIRYSSLSTLQAHQEHYCSNRLPKPAEPNATADPAVDESSSEAKTPRPAGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPTPTSNGEVTEGPPVQDRYCADCDIRFSSIKTYRAHKQHYCSTRQVVKQALAAARGGSATSGSAPPSPGATPPAQNQNQYALALPTNPILIVPYSLLRGASTLPGTTLPDPDTPCFLLPNGTFQPISRALSNMNAEGKENEVLKSANRPREPSRDGGATPLDLSVRRSPESVVTDEHEKENRLRSTTPEQIVCAPSLPGSPGTPSPSRRSSSPSAESSPKRRRLNSRGPTPKPPSVPSPPEEKYTPIVPPAILPPALAMRLASELPVTAASPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSAGGGDERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSFYCTKRETRSPRSVPEAPRPTSGSEGGWKCPCCDVVSPTAAAAQRHMDAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVLEEDSREATSPSPAVGGERVHRCGSCAYTSTYRGNVVRHARLVHATDEPEEEQTSPVPPPPTTVDIKKEPDTELEETPNYCKSCDISFKYVNTYKAHKQFYCTANNPDATANNNVPTPARVTDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00148050;
80% Identity: -