Basic Information

Insect: Lacanobia oleracea
Gene Symbol: -
Assembly: GCA_950371165.1
Location: OX493411.1:12369666-12386349[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.055 7.3 8.7 0.7 1 23 381 403 381 403 0.98

2 11 0.0036 0.48 12.4 8.8 1 23 410 432 410 433 0.94

3 11 0.39 52 6.0 3.2 1 23 437 459 437 459 0.97

4 11 0.11 14 7.8 2.0 1 23 464 487 464 487 0.97

5 11 0.0039 0.52 12.3 0.2 1 23 491 514 491 514 0.94

6 11 1.9 2.6e+02 3.8 0.5 3 21 528 546 527 551 0.91

7 11 1.6 2.2e+02 4.0 0.4 2 23 607 629 606 629 0.94

8 11 0.012 1.6 10.8 0.6 2 20 645 663 644 666 0.91

9 11 2.8e-05 0.0037 19.0 1.4 1 23 672 694 672 694 0.99

10 11 4.9e-05 0.0065 18.3 4.5 1 23 701 723 701 723 0.97

11 11 4.1e-05 0.0054 18.5 1.3 1 23 729 752 729 752 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.055	7.3	8.7	0.7	1	23	381	403	381	403	0.98
2	11	0.0036	0.48	12.4	8.8	1	23	410	432	410	433	0.94
3	11	0.39	52	6.0	3.2	1	23	437	459	437	459	0.97
4	11	0.11	14	7.8	2.0	1	23	464	487	464	487	0.97
5	11	0.0039	0.52	12.3	0.2	1	23	491	514	491	514	0.94
6	11	1.9	2.6e+02	3.8	0.5	3	21	528	546	527	551	0.91
7	11	1.6	2.2e+02	4.0	0.4	2	23	607	629	606	629	0.94
8	11	0.012	1.6	10.8	0.6	2	20	645	663	644	666	0.91
9	11	2.8e-05	0.0037	19.0	1.4	1	23	672	694	672	694	0.99
10	11	4.9e-05	0.0065	18.3	4.5	1	23	701	723	701	723	0.97
11	11	4.1e-05	0.0054	18.5	1.3	1	23	729	752	729	752	0.95

Sequence Information

Coding Sequence: ATGAGGTGCTGTGTGCCGACTTGCAAGAATGATTCGAGACACATATCCAAATCACAGGGAATCACGTTCCATGTCTTTCCCAATGAGTTATCACTCCGCAAAGCCTGGCTCAAGGCTCTTGGAAAGGAAACTTGGGAGCCCAAAGATCGAAGTGCCGTTTGCTCTGAACATTTTCTATGTGAAGACTTGTATGAGACCAAGAGTGGTTTGCGGAGGGTTAGGGCTGGAGCAGTGCCTTTGATAGTTCAGgATTCCTCGAACTGTGACTATGGAGAACCTGCTAGTTTGAAGGCTTGCAGAATTTGCCTTGTGATGGACGCAAAGTTGGTATCGATAAGAATTTATAACCTGGAGCAGGCTTATGAGAATCTCACAGGAATATCAcTATCTGAAGAAGACAAACTACCACAGAAGCTGTGCACGGAATGTGTTCAACGGTTGCTTAACTGCAGTCGATTCAGGCTCAAGAGTTTGAGAGCCAACTCACTCATGCTAGAAGTTATCAAGAAACAGGATTGTTTAACCGTCCAAAACATTAAGACAATAAACCGGTTGAATAACCAGCTAACTTCAAGTTTATCACCTAAACATTTTCAAGTGAACCACTACGATACGTACTATGAATATGAAGAAGACCAACCTATACTAGTTCAAGACAATTCTCCAACTTGTAATGTTGAAATCAAAGTAGAAAACGAAATATTTCTCACAGACGAAATCCCGGATAAGAATGACGGACTTAATGAGCCCGGAGTTAACGACCCCGGATTTGACGATCCCGGATTTGACGACGACGTAATTGCAGATACGGATGTGTTAAATGAAAAGGATGATGTTTCAGAGAAAGAGTACGTGTTATCTGATAAAGATAATTACTCGTCAGATGACAGTCTTCCTTTAGAGAAATGTAAGACCAAAAAGACGCGGAAAAGGAAAGAAAAGGAAGAAAAACCAGTTAAAGCTGctaagaaagcaaaaaagataaAAGATCCGGCTGAGCCAAAGATTGATCGAAGAAGAAAACCGTTTTTAAATGATGATCTTAACGAAACTCTTTTTACAATAACAGATTTGACGTTTGAAGAACAAATAGCTGAGATAGTGAAGAGACAAGAGAGTTCTAATTACAAGAATGCTGTTTATAAGTGTACCGCGTGCTTTAAGGGATTTTTAGATGAGGATGCTTATAATAGTCATATGTCGAGGCATACTAATCAATGTGGAGAACACGAATGCGAGATATGCAAGACGCATTTCAAACACCCGCACGCACTGCGGAAACACATCACAGCGCACCACACTCAAAGGTTCAGCTGTAAACAATGTACTTATGTCACGACGCATAGACAAACGGCGAGACTACACGAGCGATGGCATAAGGGGACCAAGTACAGGTGTCCGCATTGTCAGGATGAGTTTGTTAAGTTCACAACCTACATGGGTCACATTCGTATCAAGCATCCTTCGGACTTCGTGTGCGAACTGTGTGGGTACTCCTTCGTCAGTGCTAAGGGCATAGAGCTGCATAAGAAGCTCAAACACCGCCTGGAAAATGTACAGataccTGAAGACGGTCCTTTATGCGAGCTATGTAACGTTCGGTTCATATCATCGGAGGCTCATAAACGGCATCTCAGTGTTTCAGCAAGACATAACACAGGTACCGACAAAGACTCAAGAGAATCAAACAAACCGAAGAAGAGCAGGAAATCTAAAGAGTGCAAGGAGCTGGAGCGTCGGGCACGAGAGAAGGACGCAGATAGCGATGAAAAGAGACGAATATATCCCAGTCAGATGCGGAAGGCGGAGGGACCTATACCTTGTGAACAGTGTGGCCTCCAACTAGAAGATTCCCGGGCGTACCACGGTCACTTCAGACGGATGCACCCCGACAAGAACCGGACAAACTACCCCTCCATGAAGTCGCCATGTATGTGTGAAGTTTGTGGCAGGATGTTCCAAaGCTACGCCCTCCTAAAAGACCACACATGGGTCCACACAGGCGAGCGTCCGTTCAAATGCGACTCGTGCGGCAAATCGTTCAGGATGAAACAGCGGCTGGTGGCTCACAGACGCGTCCACAGTCAAGTGCGAGCGAGTTACGTGTGTGCGCTGTGCGGGAAGCACTTCTCGACGCATAGCAACCGACAGCGGCATATGTTTATCCACACCGGTCTAAAGCCGTTCAAATGCGAGATGTGCGGCAAAGGCTTCAAGCACGCCAGTGAGAAGCGGGCACACATTACCTACGTGCATCTGAAGAAACCGTGGCCGAAGCGCGCGAGGGGGAAGCGGAGACCGGAGACAAGACAGGGCCAGTTAGTTCCCCAAGATCAGGACATGGACATCCAAGCCCCCATGTGGCCCCCTTGCGACCCCAAGATGGGGGAAATGGGCCCCATGATAGAAGATAAACCAGTTTACTACAACTTGAAGATCTAA
Protein Sequence: MRCCVPTCKNDSRHISKSQGITFHVFPNELSLRKAWLKALGKETWEPKDRSAVCSEHFLCEDLYETKSGLRRVRAGAVPLIVQDSSNCDYGEPASLKACRICLVMDAKLVSIRIYNLEQAYENLTGISLSEEDKLPQKLCTECVQRLLNCSRFRLKSLRANSLMLEVIKKQDCLTVQNIKTINRLNNQLTSSLSPKHFQVNHYDTYYEYEEDQPILVQDNSPTCNVEIKVENEIFLTDEIPDKNDGLNEPGVNDPGFDDPGFDDDVIADTDVLNEKDDVSEKEYVLSDKDNYSSDDSLPLEKCKTKKTRKRKEKEEKPVKAAKKAKKIKDPAEPKIDRRRKPFLNDDLNETLFTITDLTFEEQIAEIVKRQESSNYKNAVYKCTACFKGFLDEDAYNSHMSRHTNQCGEHECEICKTHFKHPHALRKHITAHHTQRFSCKQCTYVTTHRQTARLHERWHKGTKYRCPHCQDEFVKFTTYMGHIRIKHPSDFVCELCGYSFVSAKGIELHKKLKHRLENVQIPEDGPLCELCNVRFISSEAHKRHLSVSARHNTGTDKDSRESNKPKKSRKSKECKELERRAREKDADSDEKRRIYPSQMRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHTWVHTGERPFKCDSCGKSFRMKQRLVAHRRVHSQVRASYVCALCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHITYVHLKKPWPKRARGKRRPETRQGQLVPQDQDMDIQAPMWPPCDPKMGEMGPMIEDKPVYYNLKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00038854;
90% Identity: iTF_00746209;
80% Identity: iTF_00850821;