Lole039817.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- pol
- Assembly
- GCA_950371165.1
- Location
- OX493411.1:8512996-8542870[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.014 1.8 10.6 2.2 3 23 1348 1368 1346 1368 0.97 2 19 0.034 4.6 9.3 0.4 2 23 1373 1395 1372 1395 0.96 3 19 0.064 8.6 8.5 1.3 1 23 1399 1422 1399 1422 0.95 4 19 0.063 8.4 8.5 2.3 2 23 1426 1448 1426 1448 0.97 5 19 0.00032 0.043 15.7 0.8 3 23 1453 1474 1452 1474 0.95 6 19 0.11 14 7.8 0.2 3 21 1493 1511 1492 1516 0.93 7 19 0.11 15 7.7 0.3 3 21 1551 1569 1550 1574 0.93 8 19 0.11 14 7.8 0.3 3 21 1608 1626 1607 1631 0.93 9 19 0.13 17 7.5 0.4 3 21 1665 1683 1664 1688 0.93 10 19 0.11 14 7.8 0.2 3 21 1722 1740 1721 1745 0.93 11 19 0.11 14 7.8 0.2 3 21 1779 1797 1778 1802 0.93 12 19 0.11 14 7.8 0.2 3 21 1836 1854 1835 1859 0.93 13 19 0.11 14 7.8 0.2 3 21 1893 1911 1892 1916 0.93 14 19 0.11 14 7.8 0.2 3 21 1950 1968 1949 1973 0.93 15 19 0.11 14 7.8 0.2 3 21 2007 2025 2006 2030 0.93 16 19 0.11 14 7.8 0.2 3 21 2064 2082 2063 2087 0.93 17 19 2.3 3.1e+02 3.6 0.0 5 21 2123 2139 2121 2140 0.93 18 19 0.0095 1.3 11.1 0.2 2 23 2153 2175 2152 2175 0.95 19 19 0.00038 0.051 15.5 1.7 1 23 2206 2229 2206 2229 0.98
Sequence Information
- Coding Sequence
- ATGGATAACAAAAAGCCCCCAGACCCTCCCGATCCCTTCGATTTTACTCCAGTTATAACGATTACCCTCCCCGATGACAAACCGCTAGAAATCACAATGGACTCCGAATCTGCTCATAGAAAAAGACCTGCAGCTTCTCCCCCGACTACCCCGATCAATCCTCCAAAGCAACCTAAAACCACAATCGGTAGACATACATACAACTTGAGGGATAACCCGCCGTTTGTTGTCCACGTTTCGCTAAAAGATGGCCAAACCTCCGGTACTGTTTTACACCCTATTAAGTTCGGAATGTTTCTACAGAAGAACAATTTTAGTAACGTCGTTCTAGGTAGTCTTAAACGTGTAGGAAGAAACAAACTAGCAGTCGATTTTAAGTCTCACCAGGACGCAAATAGCTTTTTGATAAGTCCAATATTGGTTCAACATGGTTTCATTGCATCTGTCCCACAATACAATGTTACTCGTATAGGTCTTGTGAGGGATATACCTGTTGAATGGTCAGAGGATGAAATCATTGAGAACATCAGGGTTCCCGCTGGATGTGGCCCTGTGATTAAGGCCAGAAGAATGAACCGAAAGGTGAGTTCTCTGGGCGTTACAGAATGGAAACCCACCCAGAcagttattttgacttttgacggcCAAATTTTACCCAATCGTGTCTACTGTTTTTATTCTGCCCTTCCGGTTGAAAGATACATGTACCCAACTATACAATGTTTCAACTGCTGTCGGTATGGTCACACACGCACAGTATGTAGATCAAAGCCCCGATGCTTCAAATGTGCTGAAGACCACCCAGGTGACGGATGCCAGGTTCCCAATGAATGTGCCCTCTGTGTATCTTGTTCTGGAAGCCATTATGCCACCGATAAGGCTTGCCCTGAATTGGGTCGACAGAAGGGCATAAAGGCACTTATGGCTGAGAAGTCAGTTTCTTATGCGGAAGCAAGCCAGGTACTCCCTCCCGTTACAAGATCATATGCTGAATGGAACGTCAGGAGTATTACTCCCAGGAAACCTGACTTACTCTATATTATTAATAAGTTCAAACCATCGATCTGCAGCATTGCTGAGACATGGCTTCGTCCTGGAAGCAATTTCAGGATCCCATGTTTTAGTGATGCTCGACATGACAGATCAGATGGATATGGAGGATGTGCTTTGTTCATCAATAACAAAGTACCATTCTCCCCAATTCCTTTACCCTTTGTAGGTGACAACATCAATGTTGTTGCTGTGAAGGCTGAGGATAtaaatttttttagtttttatattgcACACCCACAAATTGAAGACCTTGACACAATAAAAAGTTTGTTAAGTAGTGTACAGGGCCCATTACTTGTTATGGGTGACTTTAATGGCCATCACTATAGATGGGGTTCAGAAACCTGCGACAACTTTGGCACAGGTCTAGTGGATATATTAGATGAACTTAATTTATGTATTCTTAATGATGGCTGTGCCACACGTCGAGCTTTGCCGGGACAGAGCAACAGTTGTGTTGACCTGACTTTTTGTTCATCTAATATAGCCAGCCTTTTAAATTGGAATCGCCTGGATATGACTTATGGGAGTGATCACTATCCCATCATGGTTGAAATTCCCTCCAAAACTACTCCTGTTAAATCCTCTCCCCCCTTATTAAAATACCAGCTTAATTCAGTAGATTGGGACCTttactcaaaaattttagatttaCGTATCTCCTCCCTTCCTTCCATAAATCATGAAACTGCACGCGAGTGCTTTTCGTCATTCTCCCACACCATATCCGCTACAGCGGACGACTGCTTCCCTACCAAAAAACCGCAATCCGGCAAAATTCCATCCCCGCCATGGTGGGATAAGGATTGCTCTGCGGTGATCAGAGCCAGGAATGAGGCCGAAATGAAGTTCAACTCAGACATGAGCCTGGAGAATGTTATCAACTACCAACATGTGTTGGCTAAGTCCAAGAAACtactaaagaataaaaaaagagaagGTTGGCGGAAGTATTGCGGTTCATTGAGTCCATCCACTCCAGCTTCAGTTGTGTGGCGTAGATTGCGGGCGTATAGGAATAGTCTGAAACCATCGACCGGGAGCATACTGTCTGAAGAGCTGGGTCACCAGTTTTTCTCTAAGCTAGCCCCGGCTTATGTTCCCAGTGTAGATGAATGTGGTACAACAAACTCCCAGCTGGAATCAGATGATCCTCTGGACGGACCTTTTTCTTTAGCCGAACTTAAATCTGTCCTCTTCCATGTAAGAGACTCTGCTCCTGGGGTGGATGGATTCCCGTACTCCTTCATAGTTAAAGCCGGAGATAAGACCCACCAGTATTACTTGGACTTAGCCAATTACTGTTTTCTGTCGGGTTATGTTCCTCCTGAGTGGAAAGTTCAAGTGATTGTTCCAATATTGAAGCCTGGTAAAGATCCTAGTGATCATTGTTCTTACAGACCAATTGCTTTATCGTCCATACTTATTAAACTCTTGGAACACCTAGTTAAAAACCGTATAGAATGGTTTGTGGAGAGCAGGAAACTGCTGCCAAGGACTCAATTTGGCTTTAGGAAAAGTCTGGGTACAGCTGATAGTGTGGGTATCCTCACATCAGAGATCCGGCTGGCCCTCAGTAGGAATGAGTCAGTGGCAGTCGTTTTCTTAGATATCTCAGCCGCCTATGATTCTGTCCTCCTCCCAGTTCTCAGGCAGAAAATGCAACAGCTGAGAATCCCGGCTAGGATGCGCCAGATCATATCTAGTATCTTTTTAAACCGTAGCATCAAACTTAGGATTCCTGGGGTGGACTCTGAACCAAGGTCAGCTTGGAGGGGCCTACCTCAGGGTTCTGTACTTAGCCCCCCTTTATATAATATCTATACATATGATCTCCCTTCTTGTCTAAATTATGACTGTAAAATTCTCcagtatgctgacgatattgcaCTATTGGTCTGTAGCAAATCCATTGAAAGTGCCGCGCAATCTATGAACACGTCTTTGTCCTCATTAAACCAATGGCTGTTGGATCACGGGTTATCTCTAAGTGCTCCAAAAAGTGCAGCAGTTGTTTTTACTCGCAGACGCGTCATCCCTCGGGTTGATATCAATATTGATGGCCAAGCTATCCCAATTAAAGAGAAGACCAGGTTCCTGGGGGTGACCCTAGATTCCAAACTGTCGGGTGTGGAGCATTTTAATAACACCGTCCAAAAATGCGAGCGCTCAATCTCGGTTCTAAAGGCATTGGCAGGTGTCTGGTGGGGTGCTCACCCATACACCTTAAAATTGGTGTACAACGCGCTGGTCAGAAGCGTACTAGACTACTGTAGTTACTTACTTGAGCCGTGTAACAAAGAAGCCCTTCGTAGACTAGATGCAATCCAAGCCAAATGTCTTAGAATCGTGATTGGCGCCATGAAATCCTCACCCATAAATGCCCTACAGGATACAAGAGGCCTACTTCTGTGTTGGGAATGTGTAGCGTTGCTAAACAAGATGAAATACTTTCAAGCTCGCATCAAAACAGCTCAGTATAGACTGGTTCAGTTTCTTCAAAATTTCTATGATAACAAGAACTACATACCGCACACATTATCGCAACTAATAAAAACCAAACACAAAGAATTTGACTACAACTACGTCTTCGAAGAAGAGAAGAAAGAACTAATATTTGAACAAAACAACCTTCTTTATGAACAAAAAGACCTGATTCCCGAACAAAAAGACCtcatatttgaacaaaaagaagAAATTGAAGCAGAATGCCTTCTCACTGACATAAAACTTGAAAACAACTTACTTATTAAAGAAGAATATGatgataatattagtatagataatgacCCGAATTACTACGAACCAGATCTGAAACAGGAAACCGAAGAAGACTTTACATATTaccaaaaaccaaaaaagaGAGTTCGCAAGCTACAAAGCATAAAGAAATATGAAGAATTTACAACCATAACTAAAATTAAGGGTAAAttctctaaaaatatttttcagtattATGATATGGTGTATCTACAATACCCAACGAACTGCACATTCTGCAAAAAAGAGATATCCTCCGAATCTCATCTCGAGGAACATTGGAAGACCCACAGTCCAATGTTACGATGTTCCATCTGCGGCGATCTGTTGCGAACTAAAGGAGAGCTGACGAAACATTTGAATAGAACACATACCAAGACATTTGCTTGTAATAGTTGTTCGGAGGAATTTAGAACTCTTCGAGACTTCAGCAATCATTACATTAAGAATCACGAGAGGGCCACCTGTGATTACTGCAATGTATCTGTATGTTCAAAGAGGAAACTCGAGGGACACATCAAAAGAAACCATATCCCAGGCCACTGTTCTATCTGCAACAAAGATTACCCAACGTACTATTTATTAGAGAAACACATGCGGGGAGTCCATCCTACGCTAGTTCCTCACTTGTTAAAGAACGAAGCGAACGAGGAGACGCGCTACTGTGTGGAGTGCGACAAGCAGTATCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCCGTGGTGCATACTCCGAGGAAGAAAGTTAGCAGTCCGTGGTGCATACTCCGAGGAAGAAAGTTAGGTAAGTATGAAGAAAGTAACTACTTAACGAACGAGGAGACGCGCTACTGTGTGGAGTGCGACAAGCAGTATCCTAATGTGGACAAGTACAAGAAACACTTGCAGCAGACCGTGGTGCATACTCCGAGGAAGAAAGTTAGCAGTCCGTGGTGCATACTCCGAGGAAGAAAGTTAGGTATGTATGGAGAAAGTAACTTAACGAACGAGGAGACGCGCTACTGTGTGGAGTGCGACAAGCAGTATCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGACCGTGGTGCATACTCCGAGGAAGAAAGTTAGCAGTCCGTGGTGCATACTCCGAGGAAGAAAGACAAGTATGTATGGAGAAAGTAACTTAACGAACGAGGAGACTCGCTACTGTGTGAAGTGCGACAAGCAGTATCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCCGTGGTGCATACTCCGAGGAAGAAAGACAACAGTCCGTGGTGCATACTCCGAGGAAGAAAGTTAGGTATGTATGGAGAAAGTAACTTAACGAATGAGGAGACGCGCTACTGTGTGGAGTGCGACAAGCAGTATCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCCGTGGTGCATACTCCGAGGAACAAAGTTAGCAGTCCGTGGTGCATACTCCGAGGAAGAAAGACAAGTATGTATGGAGAAAGTAACTTAACGAACGAGGAGACTCGCTACTGTGTGGAGTGCGACAAGCAGTATCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCCGTGGTGCATACTCCGAGGAAGAAAGACAACAGTCCGTGGTGCATACTCCGAGGAAGAAAGTTAGGTATGTATGGAGAAAGTAACTTAACGAACGAGGAGACGCGCTACTGTGTGGAGTGCGACAAGCAGTATCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCCGTGGTGCATACTCCGAGGAAGAAAGTTAGCAGTCCGTGGTGCATACTCCGAGGAAGAAAGTTAGGTATGTATGGAGAAAGTGACTTAACGAACGAGGAGACGCGCTACTGTGTGGAGTGCGACAAGCAGTATCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCCGTGGTGCATACTCCGAGGAAGAAAGACAACAGTCCGTGGTGCATACTCCGAGGAAGAAAGACAAGTATGTATGGAGAAAGTAACTTAACGAACGAGGAGACGCGCTACTGTGTGGAGTGCGACAAGCAGTATCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCCGTGGTGCATACTCCGAGGAAGAAAGTTAGTAGTCCGTGGTGCATACTCCGAGGAAGAAAGTTAGGTATGTATGGAGAAAGTAACTTAACGAACGAGGAGACGCGCTACTGTGTGGAGTGCGACAAGCAGTATCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCCGTGGTGCATACTCCGAGGAAGAAAGTTAGCAGTCCGTGGTGCATACTCCGAGGAAGAAAGTTAGGTATGTATGGAGAAAGTAACTTAACGAACGAGGAGACGCGCTACTGTGTGGAGTGCGACAAGCAGTATCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCCGTGGTGCATACTCCGAGGAAGAAAGTTAGCAGTCCGTGGTGCATACTCCGAGGAAGAAAGTTAGGTATGTATGGAGAAAGTAACTTAACGAACGAGGAGACGCGCTACAGTGTGGAGTGCGACAAGCAGTATCCTACTGTGGACAAGTACAAGAAACACTTGCAGCAGTCCGTGGTGCATACTCCGAGGAAGAAAGTTAGAATACCGTGCCCGGCTTGCGACAAGATATTCTCGCGCGTGTCATACAAAAACAACCACTATAGATTGTACCACATCAAGGAAAGCAAACACTACTGCGAATTGTGTAATAAGTCAAACAGGATCCTAGCGAACCACCGCCGTACGCACACGGGGGAGCGCCCCTTCAAGTGTGAGTACTGTCACGCAGCGTTCGCGCAGGTATCCGCCATGAAGACGCATCAGAAGACTCAGCACAAGAGTGTCTTGATGTCTGGGTAG
- Protein Sequence
- MDNKKPPDPPDPFDFTPVITITLPDDKPLEITMDSESAHRKRPAASPPTTPINPPKQPKTTIGRHTYNLRDNPPFVVHVSLKDGQTSGTVLHPIKFGMFLQKNNFSNVVLGSLKRVGRNKLAVDFKSHQDANSFLISPILVQHGFIASVPQYNVTRIGLVRDIPVEWSEDEIIENIRVPAGCGPVIKARRMNRKVSSLGVTEWKPTQTVILTFDGQILPNRVYCFYSALPVERYMYPTIQCFNCCRYGHTRTVCRSKPRCFKCAEDHPGDGCQVPNECALCVSCSGSHYATDKACPELGRQKGIKALMAEKSVSYAEASQVLPPVTRSYAEWNVRSITPRKPDLLYIINKFKPSICSIAETWLRPGSNFRIPCFSDARHDRSDGYGGCALFINNKVPFSPIPLPFVGDNINVVAVKAEDINFFSFYIAHPQIEDLDTIKSLLSSVQGPLLVMGDFNGHHYRWGSETCDNFGTGLVDILDELNLCILNDGCATRRALPGQSNSCVDLTFCSSNIASLLNWNRLDMTYGSDHYPIMVEIPSKTTPVKSSPPLLKYQLNSVDWDLYSKILDLRISSLPSINHETARECFSSFSHTISATADDCFPTKKPQSGKIPSPPWWDKDCSAVIRARNEAEMKFNSDMSLENVINYQHVLAKSKKLLKNKKREGWRKYCGSLSPSTPASVVWRRLRAYRNSLKPSTGSILSEELGHQFFSKLAPAYVPSVDECGTTNSQLESDDPLDGPFSLAELKSVLFHVRDSAPGVDGFPYSFIVKAGDKTHQYYLDLANYCFLSGYVPPEWKVQVIVPILKPGKDPSDHCSYRPIALSSILIKLLEHLVKNRIEWFVESRKLLPRTQFGFRKSLGTADSVGILTSEIRLALSRNESVAVVFLDISAAYDSVLLPVLRQKMQQLRIPARMRQIISSIFLNRSIKLRIPGVDSEPRSAWRGLPQGSVLSPPLYNIYTYDLPSCLNYDCKILQYADDIALLVCSKSIESAAQSMNTSLSSLNQWLLDHGLSLSAPKSAAVVFTRRRVIPRVDINIDGQAIPIKEKTRFLGVTLDSKLSGVEHFNNTVQKCERSISVLKALAGVWWGAHPYTLKLVYNALVRSVLDYCSYLLEPCNKEALRRLDAIQAKCLRIVIGAMKSSPINALQDTRGLLLCWECVALLNKMKYFQARIKTAQYRLVQFLQNFYDNKNYIPHTLSQLIKTKHKEFDYNYVFEEEKKELIFEQNNLLYEQKDLIPEQKDLIFEQKEEIEAECLLTDIKLENNLLIKEEYDDNISIDNDPNYYEPDLKQETEEDFTYYQKPKKRVRKLQSIKKYEEFTTITKIKGKFSKNIFQYYDMVYLQYPTNCTFCKKEISSESHLEEHWKTHSPMLRCSICGDLLRTKGELTKHLNRTHTKTFACNSCSEEFRTLRDFSNHYIKNHERATCDYCNVSVCSKRKLEGHIKRNHIPGHCSICNKDYPTYYLLEKHMRGVHPTLVPHLLKNEANEETRYCVECDKQYPTVDKYKKHLQQSVVHTPRKKVSSPWCILRGRKLGKYEESNYLTNEETRYCVECDKQYPNVDKYKKHLQQTVVHTPRKKVSSPWCILRGRKLGMYGESNLTNEETRYCVECDKQYPTVDKYKKHLQQTVVHTPRKKVSSPWCILRGRKTSMYGESNLTNEETRYCVKCDKQYPTVDKYKKHLQQSVVHTPRKKDNSPWCILRGRKLGMYGESNLTNEETRYCVECDKQYPTVDKYKKHLQQSVVHTPRNKVSSPWCILRGRKTSMYGESNLTNEETRYCVECDKQYPTVDKYKKHLQQSVVHTPRKKDNSPWCILRGRKLGMYGESNLTNEETRYCVECDKQYPTVDKYKKHLQQSVVHTPRKKVSSPWCILRGRKLGMYGESDLTNEETRYCVECDKQYPTVDKYKKHLQQSVVHTPRKKDNSPWCILRGRKTSMYGESNLTNEETRYCVECDKQYPTVDKYKKHLQQSVVHTPRKKVSSPWCILRGRKLGMYGESNLTNEETRYCVECDKQYPTVDKYKKHLQQSVVHTPRKKVSSPWCILRGRKLGMYGESNLTNEETRYCVECDKQYPTVDKYKKHLQQSVVHTPRKKVSSPWCILRGRKLGMYGESNLTNEETRYSVECDKQYPTVDKYKKHLQQSVVHTPRKKVRIPCPACDKIFSRVSYKNNHYRLYHIKESKHYCELCNKSNRILANHRRTHTGERPFKCEYCHAAFAQVSAMKTHQKTQHKSVLMSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -