Basic Information

Insect: Lacanobia oleracea
Gene Symbol: -
Assembly: GCA_950371165.1
Location: OX493412.1:3784201-3790225[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00013 0.018 16.9 3.5 2 23 104 128 103 128 0.95

2 15 4.8e-05 0.0064 18.3 2.6 1 23 135 157 135 157 0.98

3 15 0.0013 0.17 13.8 0.1 2 23 163 184 162 184 0.98

4 15 0.0085 1.1 11.2 4.3 1 23 190 213 190 213 0.83

5 15 0.78 1e+02 5.1 0.1 2 12 219 229 218 232 0.87

6 15 0.0021 0.28 13.2 1.4 1 23 236 259 236 259 0.91

7 15 0.78 1e+02 5.1 0.1 2 12 265 275 264 278 0.87

8 15 0.00038 0.051 15.5 2.7 1 23 282 305 282 305 0.93

9 15 4.3 5.7e+02 2.7 0.1 2 9 311 318 310 320 0.87

10 15 0.0021 0.28 13.2 1.4 1 23 360 383 360 383 0.91

11 15 0.78 1e+02 5.1 0.1 2 12 389 399 388 402 0.87

12 15 0.00038 0.051 15.5 2.7 1 23 406 429 406 429 0.93

13 15 0.77 1e+02 5.1 0.1 2 12 435 445 434 449 0.88

14 15 0.73 98 5.1 0.2 1 14 452 465 452 467 0.86

15 15 0.61 82 5.4 0.1 2 12 481 491 480 493 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00013	0.018	16.9	3.5	2	23	104	128	103	128	0.95
2	15	4.8e-05	0.0064	18.3	2.6	1	23	135	157	135	157	0.98
3	15	0.0013	0.17	13.8	0.1	2	23	163	184	162	184	0.98
4	15	0.0085	1.1	11.2	4.3	1	23	190	213	190	213	0.83
5	15	0.78	1e+02	5.1	0.1	2	12	219	229	218	232	0.87
6	15	0.0021	0.28	13.2	1.4	1	23	236	259	236	259	0.91
7	15	0.78	1e+02	5.1	0.1	2	12	265	275	264	278	0.87
8	15	0.00038	0.051	15.5	2.7	1	23	282	305	282	305	0.93
9	15	4.3	5.7e+02	2.7	0.1	2	9	311	318	310	320	0.87
10	15	0.0021	0.28	13.2	1.4	1	23	360	383	360	383	0.91
11	15	0.78	1e+02	5.1	0.1	2	12	389	399	388	402	0.87
12	15	0.00038	0.051	15.5	2.7	1	23	406	429	406	429	0.93
13	15	0.77	1e+02	5.1	0.1	2	12	435	445	434	449	0.88
14	15	0.73	98	5.1	0.2	1	14	452	465	452	467	0.86
15	15	0.61	82	5.4	0.1	2	12	481	491	480	493	0.87

Sequence Information

Coding Sequence: ATGGATCAATCTATTGGTATACTATCTGATGGCTCTGATCAACAAAGCAGCAATACGAATTATAATTTGGAAATCGATCCTTTGGGAGAAATTGAGGCTGAAGACGCTTTAGCTACTAAACCGAAATTCTATAGAATGAACAGAATTGTGTTTGCCGAACCTATAAAAACAACTAAGAATGAAGAAAACACTACTAAAGaggCGGAAGACAACAATGAAATAATGATTTTAGACAATGTAATAATACAAAAAGACCCTGGcaagaaatataaaaagtatCACTTTAATATTGAAGATGGTTCTCCTACAAGTTGTCCTCAGCTGAACTGCCACCGATCATTTACAACAAAGAACTGCCTCATAGCCCACATACGTAGAGTGCACTGTGCAGACCGCAAGAAGTATATCTGTGAACACTGTGGTCGGGGTTTCCCTGAGAGACACATGCTGAGAAGACACACTGACACTCACAGTGAAGACACAGTGCAGTGTCCTGTTTGTGGCGTGAAGTTGAGGTTGAGGACCAGCCTAGCCACCCATCTCCGTTCTCACTCGAACGAACGACCCCATCAGTGTCATATCTGCAAGAAGACATTCACGAGAGCCTCCATCAAGACCAACCACGTCAAGTTTGTGCACAGAGAGGGATTGTTGGAGTGCGATGAGTGTGATAAAAGGTATGTCACTGTCCAGCTTAGACATCCTCATGAGTGTGATATCTGCAAGAAGACATTCACGCGAGCCTCCATCAAGACCAACCACGTCAAGATTGTGCACAGAGAGGGATTGTTGGAGTGCGACGAGTGTGATAAAAGGTATGTCACTGTCCAGCTTAGACATCCTCATGAGTGTGATATCTGCAAGAAGACATTCACGAGAGCCTCCAGCAAGAGCAACCACGTCAAGTTTGTGCACAGAGAGGGATTGTTGGAGTGCGACGAGTGTGATAAAAGCTTAGACATCCTCATGAGTGTGATATCTGCAAGAAGACATTCACGAGAGCCTCTAGCAAGACCAACCACGTCAAGTATCGACGAGTGTGATAAAAGGTATGTCACTGTCCAGCTTAGACATCCTCATGAGTGTGATATCTGCAAGAAGACATTCACGCGAGCCTCCATCAAGACCAACCACGTCAAGATTGTGCACAGAGAGGGATTGTTGGAGTGCGACGAGTGTGATAAAAGGTATGTCACTGTCCAGCTTAGACATCCTCATGAGTGTGATATCTGCAAGAAGACATTCACGAGAGCCTCCAGCAAGAGCAACCACGTCAAGTTTGTGCACAGAGAGGGATTGTTGGAGTGCGACGAGTGTGATAAAAGGTATGTCACTGTCCAGCTTAAACGTCCTCATGAGTGTGATATTTGCAAGAAGAGAGTCACTAGAGTCTCCAGCAGAAGCAACGACGTCAAGTTTGTACACAGAGAGGGATTGTTGGAATGCGATGAGTGTGATAAAAGGTATGTATCATCCCTGTCCAGCTTAGACATCCTCAAAGGTGTGATATTTGCACGAAAACATTCACGAGAGCCTCCATCAAGACCAACCACGTCAAGTTTTTGCACAGAGAGGGATTGTTGGAGTGCGATGAGTTTTATAAAAGGTTCTCATCGCGGAAACAATGGAGTCTCCATAAGAAAACCCATAGAGAAAAGACACCGGGCTGATGCTTCTCAAGACATGGACAAGGATAGTCAGCTAGGACACATCTGCCTCATCTACCTAAAATGA
Protein Sequence: MDQSIGILSDGSDQQSSNTNYNLEIDPLGEIEAEDALATKPKFYRMNRIVFAEPIKTTKNEENTTKEAEDNNEIMILDNVIIQKDPGKKYKKYHFNIEDGSPTSCPQLNCHRSFTTKNCLIAHIRRVHCADRKKYICEHCGRGFPERHMLRRHTDTHSEDTVQCPVCGVKLRLRTSLATHLRSHSNERPHQCHICKKTFTRASIKTNHVKFVHREGLLECDECDKRYVTVQLRHPHECDICKKTFTRASIKTNHVKIVHREGLLECDECDKRYVTVQLRHPHECDICKKTFTRASSKSNHVKFVHREGLLECDECDKSLDILMSVISARRHSREPLARPTTSSIDECDKRYVTVQLRHPHECDICKKTFTRASIKTNHVKIVHREGLLECDECDKRYVTVQLRHPHECDICKKTFTRASSKSNHVKFVHREGLLECDECDKRYVTVQLKRPHECDICKKRVTRVSSRSNDVKFVHREGLLECDECDKRYVSSLSSLDILKGVIFARKHSREPPSRPTTSSFCTERDCWSAMSFIKGSHRGNNGVSIRKPIEKRHRADASQDMDKDSQLGHICLIYLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -