Lole041433.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493412.1:16677990-16685959[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.058 7.8 8.6 0.0 1 23 215 237 215 237 0.97 2 12 0.00047 0.063 15.2 3.6 1 23 243 266 243 266 0.94 3 12 0.76 1e+02 5.1 1.4 1 23 280 302 280 302 0.90 4 12 2.4e-05 0.0032 19.2 3.8 1 23 545 567 545 567 0.98 5 12 0.0052 0.69 11.9 1.8 2 23 573 595 572 595 0.96 6 12 0.00026 0.035 16.0 0.7 2 23 604 625 603 625 0.94 7 12 2.5e-05 0.0034 19.2 1.2 2 23 629 650 628 650 0.97 8 12 0.064 8.5 8.5 1.4 2 23 664 686 663 686 0.96 9 12 7.3e-06 0.00098 20.9 2.0 1 23 692 714 692 714 0.98 10 12 0.0017 0.23 13.4 1.8 2 23 721 742 721 742 0.98 11 12 8.2e-05 0.011 17.6 1.8 1 23 748 771 748 771 0.97 12 12 0.011 1.4 10.9 2.6 1 23 775 798 775 798 0.96
Sequence Information
- Coding Sequence
- ATGAATGAAGAAGATATTTTTCCGGTATTATGTCCCAAGAAAACATATTCAAATCAATGTAAAAAGGTGAAAAAGACAATATCAGAGTCTAATAATATGGGAAAGACCCCTAGACGAGCAGGAAAGGTCCACGATCCTGGTGTACCGTTGACTACTAAAGTTGCTGTGGAGTATTTGTTGAGTGGGAAGTTAAAGACGAGTGTATGTCGTTACTGCCTAAAAGTAACGGTCGGACTGTCCGAACTGGACCAGATAATGCAGATAGCTGGCACAGGAGTCATGTATAAAGTATCTATAAGAGAAATGATAGCCTGTTTCTACCCTTTCAAGGCTAGAGAAGAAGAAAGCTTTCCTAATAAAATCTGTCAGAGGTGCATAGACAGAGCTATCAATGCTTACCTCTTCACCCAGCAGTGTGAACAGGCCGAAAGAGCTTTACACAACTGTTTTGATGACATGAACGAGAAATTCAATAAACTAGACCCtgttgatagaaagaaaaagagaggCAGACAAAAACTTAACCCAAACCCCAACACGTTATACGCAGAACATCATAATGTAATGGATTACGCTGAACCTTTACGAAACTTAATCAACTTCCAAACAGAATCATTGAGCAATGAACCAAATTGGAACGAATTTGAATGCAAAAAGTGCTGGGAAGTCCTCCCAGAGTTAGAATCATTGTTGAACCACGAGCAAGTACATCCTAAATACATGTGGTATCACTGCCGTTTGTGCGGCAAATCTTTTGTAAAACTCAACCAGTTGAAGAAACACTTCAACCAAGTCCATATACGACAAAATGGTGTTATGGATGAAGTCGACAAGTCTTTCAAATGCAAAGAATGTGGGAATGTGACGGAGAGTTACGTACAACATCTACAGCATATAGAAAAGCATAAGTTTAAGAGTGTAATGAAACATGTGATTGAGAAGAAAACAGACCAGCTGTGCGTGGTTTGTCTGAAGAAAAGTACGGATTTGGTGGAGTTGGATAAAATGGTCAGCATATATGGAAGTTGTCCAGAATTGGTTGGAGATAAATCACTGTATACGGTGTTAGCATCAACCTTACCTGATATGAACTACCTACACAACTTTATCGggacaaaaatatgcgaaaaGTGCCTTAATCACGCGATCACTTCATACGTATTTATACACCAGTTTAGTTTTACAAGAGAACGCCTAGATCTGTGCGTCAGCCTTATGTTAGAAAACCTTAGCAAAATCACTCCTAGCGCTAACGTTTTCGTACAAGTTTCACCACCAAGCATCATGGCTCCTCCAGAAGAGTTAGAAGAATTAGTACTCCTAGATGACAACGATTTTATAGATGAGAGTAAACTAAAAATAGATGTTTTAGAAGACGAGTTTAGATTGAAATCTGAGAGTGAGAGTGAAAGCGAACCGGAGGAGAAATTTGAAGTTCCTCCGTTGTCACCAAAAAGGTTAAGTTCAGAAAATTCAACCCCAGAAATGGAGAATTTAGCTAGCAACGCAACTAAGACTTATATGAATAGAAAAATGGTAAACGGCTTGCAAAGTTCAAGATACCCTGTCGATGTGTGTAGTGAGTTTTTAACGTTTAACAAAAGGAAAAAAGTCGAAAAGGTCTCCTTTAAATTCACTTGCCCACTCTGTAGTAAACATTTTATATcgcaatatttcttaaaaagacATATTCTTAAACATGTGAACAAGAAAGTTCAATGTAATTTATGTCATGGTGTGTTCAAATCTAAGTTCTATTTGTATGAACACACGAAAATGGTACATTTATTGAAAGAGAGCTTTTATATGTCGTGTAAGGTGTGCGGTAGGAATTTTACTGACACAGATAAGCTGCAGACTCATGAAGAAAACCATAGAATTAAACCTTGTGAGCTCTGCAATAAGGTCTATACTACCCAAGCACACTACGAAAACCACATCCAAAGACACGCAGTCAAACTGAAGCTTCTAAACGAAAAACAATCCCAAACATGCAGTTTCTGCGAGAAAGAATGTTCAAACGACAATGAACTCTCTGTCCACGTCAATAAGAtacatttacaaataaaaccgTACAGTTGCGATATGTGTGATAGACAATTTTATACTGAAAGTAATTTGAAGAACCATAAAAAGGTTCATAGTATGCCTTCGAAGGAAACGTGCGAATTTTGTAGTAAAACTCTTAGAAGTAGGAAACAGTTAGTAATTCATGTTAGGAAACATATAGGGGCGAAGCCTTTCTGCTGCCAAGTTTGCGGGCAGGCATTCTACTCGGCTTCTAAAGCCAGAAAACATATGAGAATAAACCACGGTGGCCGATTTTGCTGTAGAATATGCAAATCTATCTTCGCAACCAAATATGAACTTAAAGGTCACGTGAAAAGAGACCATAATATCATTTAG
- Protein Sequence
- MNEEDIFPVLCPKKTYSNQCKKVKKTISESNNMGKTPRRAGKVHDPGVPLTTKVAVEYLLSGKLKTSVCRYCLKVTVGLSELDQIMQIAGTGVMYKVSIREMIACFYPFKAREEESFPNKICQRCIDRAINAYLFTQQCEQAERALHNCFDDMNEKFNKLDPVDRKKKRGRQKLNPNPNTLYAEHHNVMDYAEPLRNLINFQTESLSNEPNWNEFECKKCWEVLPELESLLNHEQVHPKYMWYHCRLCGKSFVKLNQLKKHFNQVHIRQNGVMDEVDKSFKCKECGNVTESYVQHLQHIEKHKFKSVMKHVIEKKTDQLCVVCLKKSTDLVELDKMVSIYGSCPELVGDKSLYTVLASTLPDMNYLHNFIGTKICEKCLNHAITSYVFIHQFSFTRERLDLCVSLMLENLSKITPSANVFVQVSPPSIMAPPEELEELVLLDDNDFIDESKLKIDVLEDEFRLKSESESESEPEEKFEVPPLSPKRLSSENSTPEMENLASNATKTYMNRKMVNGLQSSRYPVDVCSEFLTFNKRKKVEKVSFKFTCPLCSKHFISQYFLKRHILKHVNKKVQCNLCHGVFKSKFYLYEHTKMVHLLKESFYMSCKVCGRNFTDTDKLQTHEENHRIKPCELCNKVYTTQAHYENHIQRHAVKLKLLNEKQSQTCSFCEKECSNDNELSVHVNKIHLQIKPYSCDMCDRQFYTESNLKNHKKVHSMPSKETCEFCSKTLRSRKQLVIHVRKHIGAKPFCCQVCGQAFYSASKARKHMRINHGGRFCCRICKSIFATKYELKGHVKRDHNII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907334;
- 90% Identity
- iTF_00300586;
- 80% Identity
- -