Lole008083.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lacanobia oleracea
Gene Symbol
L
Assembly
GCA_950371165.1
Location
OX493388.1:14163130-14220202[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 3.7e-06 0.00049 21.8 1.7 1 23 1019 1041 1019 1041 0.99
2 15 1.6 2.1e+02 4.1 5.8 1 23 1047 1069 1047 1069 0.97
3 15 2.1e-05 0.0028 19.4 4.1 1 23 1075 1097 1075 1097 0.99
4 15 6.5e-05 0.0087 17.9 0.1 1 23 1103 1125 1103 1125 0.98
5 15 0.0037 0.49 12.4 0.0 2 23 1141 1163 1140 1163 0.94
6 15 0.75 1e+02 5.1 0.0 3 23 1261 1281 1260 1281 0.97
7 15 0.37 50 6.1 0.0 3 23 1295 1315 1294 1315 0.91
8 15 2.2e-05 0.0029 19.4 1.1 1 23 1323 1346 1323 1346 0.95
9 15 0.24 33 6.6 0.0 1 23 1351 1374 1351 1374 0.92
10 15 0.034 4.6 9.3 0.1 1 23 1435 1459 1435 1460 0.94
11 15 0.0005 0.066 15.1 0.1 2 23 1523 1544 1522 1544 0.96
12 15 0.14 19 7.4 0.0 1 23 1552 1574 1552 1574 0.97
13 15 2.2 2.9e+02 3.6 0.3 1 23 1678 1700 1678 1700 0.94
14 15 0.0087 1.2 11.2 0.1 1 20 1708 1727 1708 1730 0.95
15 15 0.38 51 6.0 0.3 1 23 1737 1759 1737 1759 0.94

Sequence Information

Coding Sequence
ATGACGATCGGAAAAATAGCCGAGTTTAACGTCCACAAAGACGATTGGAATCTATATGTCGAACGGTTAGAACAATACTTCGTTGTGAACGACATACAGGAGGATTTACATGTACCGACGTTAATAACCGTAATGGGGGCAGAGGGTTACGAGCTGCTGGTCAATCTGTGTACACCGAATAAACCAAAAACGAAGACGTTTGAGCAATTAACGGAAATCATGGGTAAACATTTACAACCTAAACCTAGTGAACTCGCTGAGAGGTACAAATTCAGGCATAGGAAACAGAAACCGGGGGAAAGCATATCCGAGTACGTGGCGGTGCTGAAGAAAATGTCGAAGACCTGTGAGTTCGGAAGTTGGCTCGAAGAAAGTTTGAGGGATCAATTGGTGTGCGGAATAGCGAGCGAGAATATTAGGCAACGGTTATTCGCAGAGTCAAAACTGGATTTTGCCAAGGCGTATAAACTAGCCGCCAGCATGGAATCAGCAGAGAAGGACGCTGCTATAGTGGAAGAGCCTAAATCGTCAGCGGGAACGGACGCAACGACGGTGACGTGTCAAGCGATGACGACGAGACGGCATGCAGCGGGCGGGGCGGAGCGCGGCTGGCAGCCGGGCGTCGCGCGGCGCGAAGTGCGCGAGCGACGTGATTTCCGGGAGCGGCGCGCGGGCCACGAGTCGGTGATGTCGGTGCCGGGTGAGCGAGCTCGGCCGGGGGAGCGAGCTCGGCCGGGGGAGCGAGCTCGGCCACAGCGGCCATGCCGGGTGTGTGGCGCTAACCACAACGAATCGACGTGCAAGTTCGCAAGTTACGTGTGTAGGGTTTGCAACCAGCAAGGGCACCTGCGACGTATGTGTCCTAATATGGTGGGACAGCATCAGGTAGACGTGCAAACCGCCGGCAAGGACGAAGAGGCGGACAGTGACGAGGTAATTATTGTTGATGTTTGTCGGTTGTCGATATCAAGTTGTAAACCTATCTATATATCactgaatgtacataataaagacatTGCTATGGAATGTGACACAGGTAGTGCAGTGTCTTGTATTAGTCGGGAGTGTTACAATAGACTATTCAACGATCTTACCCTACAACCATGTAAAGTAATATTAAGATATTATACGGGTGAGACTGTTAAACCGTTAGGTATAATAAAACCGCTAGTTCGGTATAAGAATAGAAGTGAATTTTTGGAATTACTTGTTATAGAAAAAGGAAAAACTGTACTTTTAGGACGACATTGGATAGCGGCATTAAAGATACAACTACCCGATTTAAGTTACGATGTGCATAAAATGTGGGAAAGTAATGAATACGATGTACCCTATTTCAGTTCCATATACTGTAACGTGTTCGCGGAGGGCCTCGGGTGCTTCACGGGCGGCGCAGTGAGCATTCACGTGCGCGAGGGGGCGCGGCCGGTGTTCatgcgcgcgcgcccgctggcgtacgcgctgcgcgagccggtggagcgcgcgctggAGCAGTTCGTGCGCGACGGAGTTCTCACCCCGGTGGAGCGTTCGGACTGGGCTACGCCGATAGTTCCAGTGGTAAAGAAGGACGGTAGTATTCGTATTTGTGCCGATTATAAACTGACCTTAAACAAAGTCATAGAAATTGACCGTTATCCGCTGCCTAGGGTAGAAGATTTGTTATTTCGTCTCCGAGGGGGTGAATACTACAGTAAAATCGATTTGTCTCAAGCATACGCGCAATTTGAGCTCgatgacacaaaaaaatacacgTATTTTTCGCCTGCTTATCATCCGTCGTCAAACGGAGCAGCAGAAAATGCAGTTAACATATGCAAACGCACTATCAAAAAGGCTATTAGGGATCGCGTGGATGTAGACACAGCTTTACAATCATTCTTACTAGCATACAGAAACACGGCGCACAGCACAACTGGTGAGACACCCGCTATGTTGTTGCAGAAACGAACACTACGGTCCAGGTTGGATTTGTTACGAACGGAACGATCAGTAGGTACCAGAGTGCAGGATGCGCAGCAGAGACAAATCGATTCATCAGGTGGGGTTTTGCGATCGTTCAACGAGGGCGATCCCGTTTGGATGAGGGATTACAATTCCTCAAATAAATGGGTAAAGGGTTCGATTACAAACGTGGATAGTGCCCGTCAGTATATAATAGCAAGGGATAACGGTCAATTCATTAAAAGACACGTTGATCAGATACGGCGCAGATCTCGAGTATCGGTTGGTGGACCGAACACTGAAGAAGAGGGAACGATGGAGGGTGAGAGCTCCGTAGCGCAGGCTGAGGATAACTCATTAAAGTCGAGGAAGAATGAGGAAGACCGCAGTGATGAGAATGTGGTTGAGGGAAATAAGtcgaaacaaacaataaacgaTGAAGTAGGAGGTGTTGATTCTGATCAGCCATCTAATCAATCACCTGGTTTATCAGATCAGCAGCAAGCAGAGTACCCAAAGCGAACACCTGGAAAGAGTGAGTGGGTGCAAGTGGGGGGAGGTCGTGTGGGCGGGGCGGCGGGGCGGGGCGCAGGGTGCTGCACCTCGGAGCGACTCGCCCTGTGCCGCGCGCTCGGGACAGTCGCGCAGCACTCGCCGCTCACGGCGCTCGTCCGCCGCAGCACCTCGCACGAGCACGAGCTCGCCGACCACCGGAACACTACTCCCTCATTATATCATTTCGTCGATACGGACGACACTGGCCTCAAACTCGCAACCACCTGTTATCGGGAAATAAAGGCGAGCAGCTTCGAGCACGGTGAGAGCCTCCCAGCTGCTGGAGATATGATCATGCTATTCAAAGGCAACAGCAGTCGACTGGAGCACCTCATTGAGAAGATCCAGGCGAACAAAGAAAACCACGACGTCACATCTGAGGATATAAAAGAGGCGCTGGGCAGCGTGGGCAGCACGGCGGGCAGCTCGTGGCCATCGTCGACGCCGGAGCCGTCGCCGTCGCCGGCGTCCACGCCCACCTCGGCCGACGCCGCCGACAACGCCGACGCCAACGCCGACCCCCCCTTCACGCTCGGCGCCACCGAGCACACCCCCTACCAGTGCCAGTTCTGCGATAAAGCCTTCCCCAGGCTTTCGTATCTCAAGAAACATGAACagACCCATTCGGATCAGATGCCATTCAGATGCGAGTTCTGCTCGCGCCTGTTCAAGCACAAGCGCTCCCGCGACCGCCACGTCAAGCTGCACACCGGCGACCGCAAGTACCGCTGCGCACACTGCGAGTCCGCCTTCTCCAGGAGCGACCACTTGAAGATCCACATGAAGACGCATGACAACCAGAAGCCGTTCCAGTGCACCGTGTGCAACCGAGGGTACAACACAGCAGCCGCTCTGACGTCACACATGCAGGGCCACAAGAGAGACCGCGAGGGCCGCGAGCCGGACAGACGCAGAGCTGTGCGGTGTCTGCGGTGCGGCGACGCCTTCCGCCGACCGGACTTGTTGCAGGCACACATGGTGAGCGCACATGGCGTCGACACTGCATCCGTGACGCCACCGCGGCGCGTCTCGTCTCAGCCGCCGCCCACCCTGCTCGCCTGCATCTACTGCACGCGCGACACTTTCACCAGCATGGAGCAGTTACAGCTGCACGTACGCGCCGCACATTCAGCCCTACACAACGGTGAAGGACCGCTGCAAGTGGATCAGCCTGCGCCTACTGATCTCAGCCGACGGGCGCCTGATGAAGTACCCCCAGTCAAACGTCCTCGCTCCGGCTCTGGCACGCCACAAACAACGTTATCACCAAGCACCCTTCTCTGCAATCAATGTGACGCTGCGCTTCCAGATTTTGAAGCTTTCCGCGCTCATTTGAAGGGTCATATTGAGGAAGGAGGGGAGCTAAGATCAAGCCCTGCGCCATGCGTTCACTGCGGTGCTTCGTTCGCGGACGCTGCGGCCTCGGAGCGTCATCTCACGGCGCATTACTTGGCGGTCTCGTGCGAGTACACCTGCCACAGCTGCACTCGAAGCTTCGCTACTCCAGATGACTTGCAGAAACATCTTCTTGAACTACACGCGCATCACCTGTATAGATGTGCTCTTTGCAAGGAGATTTTTGATTCGAAGGTTGCAATTCAGGTGCATTTCGCTGTAGCACATAGTGGCGAAAACAAAGTGTGGGTATGTCGTTCTTGCGGTGCGGGCGCTGGTGCCCTACGCTCAGAAGCCGAAGGCGTCGCGCACGTGCGCGCCCGCCACGCAGCGTCTGCGCCGCGCTGCGCCTGCGGGGCGTTGCTCGGCAGCGGGATGGCCACGAGGACGCCGCGACCACACCGCGCGTATCGATGTCCTGTGCCCGCCTGCAACGATGCATTTGCCGTGCAGTACCTCCTTGAAAGACACATGCAGGCACATCACGCTATGCAGCAACAGGTCCTTAACGGAGAATTATCACGTACGAAAAGAATGGATTCGACCAATGGCGGCGAGGGAGGTGAAGACGCTCGCTCTCCATGCACCCCCGGAGCAGAGAGCGGTGGTGTGACCACTGCGGTGGTGGCGGCCAGCGAGGAGCGCCGGCGGAAGAACGGCGCCGTCGCCTTACAATGCGCCTACTGCGGAGAGCGCACGCGCAGTCGCGCCGAGTTGGAGGCGCACACACGAGCTCACTCAGGCGCCGCGGCCGCGCGGCACAAGTGTCTGATCTGCGACGAAGTGCTGCCGTCTGCCGCGGTGCTTGCTGAGCACAAGCTCACACATTGCAAGGTGGTGTCAGGCGATACGTGCTCCCGCTGCCGCGCGCGACTGCTGTCGGAGGAGTCGTTCCTGGGCCACATGGCACGCCACCACCCCGCGCTGCCGGCGCCCTGCGTCGTGTGCCGCCAAACGTTGGCGTCCGAGGCCGAGGCGCGCCTGCACGCGCGGTTCCATCTGCGCCCCGGAGAGGATGAGCAAAGGTGCGCTATTTGTCTGCGCGCGCTGCCGGAAGGCGAGGCAGGCGAGGGTGCACGCGCGTGCTCGGCGTGCTACGCGCGTCACGCGGCGCCGCGCGTGCCGCCGCCCGCCGACCACGACTGCCGCCTGTGCCGCCGCGCGCTCGGCTCGCCCACGCGGCTACAAGCTCACCTCATCGAGCACACGTTCGCGGGCATCGGCGCCTTCACGTGCTACCTGTGCTCCGCCGTGTTCACGAGCGCGGCCGGCCTGCAGCGCCACTTGCCGGAGCACGCGTCCGCGCCGCGACCCTACGACTGCGCAAGATGTGGACTCAAGTTCTTCTTCCGAGCTGAACTTGATAATCATGCGTTCGTGCATCTCGAAGAAGCAGAGATTGCGCAACGAGCCTTCTATGAAGCGTACGCGCGAGGGGCCGCGTCGGCGTGGGCTGCGCTCGCCCCGCCCGAGCCCCGGAGCTCGCCGCCGCAGGCCGAGGTGAAGCGCGAGCCGGAGATCAAGGAGGAGCGCGGCGCCGACGAGTATATCGAGGTGTCGtccccgccgcccgcgccccccgcgcctccTTCACCCGCTCCCCTTGTCAAGCAGGAGAAGCCTGACGAGGAGTAA
Protein Sequence
MTIGKIAEFNVHKDDWNLYVERLEQYFVVNDIQEDLHVPTLITVMGAEGYELLVNLCTPNKPKTKTFEQLTEIMGKHLQPKPSELAERYKFRHRKQKPGESISEYVAVLKKMSKTCEFGSWLEESLRDQLVCGIASENIRQRLFAESKLDFAKAYKLAASMESAEKDAAIVEEPKSSAGTDATTVTCQAMTTRRHAAGGAERGWQPGVARREVRERRDFRERRAGHESVMSVPGERARPGERARPGERARPQRPCRVCGANHNESTCKFASYVCRVCNQQGHLRRMCPNMVGQHQVDVQTAGKDEEADSDEVIIVDVCRLSISSCKPIYISLNVHNKDIAMECDTGSAVSCISRECYNRLFNDLTLQPCKVILRYYTGETVKPLGIIKPLVRYKNRSEFLELLVIEKGKTVLLGRHWIAALKIQLPDLSYDVHKMWESNEYDVPYFSSIYCNVFAEGLGCFTGGAVSIHVREGARPVFMRARPLAYALREPVERALEQFVRDGVLTPVERSDWATPIVPVVKKDGSIRICADYKLTLNKVIEIDRYPLPRVEDLLFRLRGGEYYSKIDLSQAYAQFELDDTKKYTYFSPAYHPSSNGAAENAVNICKRTIKKAIRDRVDVDTALQSFLLAYRNTAHSTTGETPAMLLQKRTLRSRLDLLRTERSVGTRVQDAQQRQIDSSGGVLRSFNEGDPVWMRDYNSSNKWVKGSITNVDSARQYIIARDNGQFIKRHVDQIRRRSRVSVGGPNTEEEGTMEGESSVAQAEDNSLKSRKNEEDRSDENVVEGNKSKQTINDEVGGVDSDQPSNQSPGLSDQQQAEYPKRTPGKSEWVQVGGGRVGGAAGRGAGCCTSERLALCRALGTVAQHSPLTALVRRSTSHEHELADHRNTTPSLYHFVDTDDTGLKLATTCYREIKASSFEHGESLPAAGDMIMLFKGNSSRLEHLIEKIQANKENHDVTSEDIKEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAADNADANADPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRAVRCLRCGDAFRRPDLLQAHMVSAHGVDTASVTPPRRVSSQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALHNGEGPLQVDQPAPTDLSRRAPDEVPPVKRPRSGSGTPQTTLSPSTLLCNQCDAALPDFEAFRAHLKGHIEEGGELRSSPAPCVHCGASFADAAASERHLTAHYLAVSCEYTCHSCTRSFATPDDLQKHLLELHAHHLYRCALCKEIFDSKVAIQVHFAVAHSGENKVWVCRSCGAGAGALRSEAEGVAHVRARHAASAPRCACGALLGSGMATRTPRPHRAYRCPVPACNDAFAVQYLLERHMQAHHAMQQQVLNGELSRTKRMDSTNGGEGGEDARSPCTPGAESGGVTTAVVAASEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVSGDTCSRCRARLLSEESFLGHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPGEDEQRCAICLRALPEGEAGEGARACSACYARHAAPRVPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHASAPRPYDCARCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPEPRSSPPQAEVKREPEIKEERGADEYIEVSSPPPAPPAPPSPAPLVKQEKPDEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-