Basic Information

Insect: Lacanobia oleracea
Gene Symbol: -
Assembly: GCA_950371165.1
Location: OX493415.1:8818320-8824340[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.02 2.6 10.1 0.5 1 23 77 100 77 100 0.95

2 16 4.5 6.1e+02 2.7 0.5 8 23 181 196 172 196 0.82

3 16 0.00023 0.031 16.2 0.3 1 23 200 222 200 222 0.98

4 16 0.3 41 6.3 3.7 2 23 258 280 257 280 0.95

5 16 0.0008 0.11 14.5 0.5 1 23 287 310 287 310 0.97

6 16 0.00011 0.014 17.2 4.2 1 23 316 338 316 338 0.98

7 16 3e-07 4e-05 25.3 1.0 1 23 344 366 344 366 0.99

8 16 0.86 1.1e+02 4.9 3.3 1 23 456 479 456 479 0.97

9 16 0.0027 0.36 12.8 1.5 1 23 633 656 633 656 0.94

10 16 0.00065 0.087 14.7 0.3 1 23 753 775 753 775 0.91

11 16 0.0032 0.43 12.6 1.5 1 23 780 803 780 803 0.97

12 16 0.00033 0.045 15.7 1.0 1 23 810 833 810 833 0.95

13 16 0.00068 0.091 14.7 0.3 2 23 841 863 840 863 0.95

14 16 0.00051 0.068 15.1 1.2 1 23 869 891 869 891 0.95

15 16 8.9e-05 0.012 17.5 3.8 1 23 897 919 897 919 0.99

16 16 2.6e-05 0.0035 19.1 1.4 1 23 925 948 925 948 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.02	2.6	10.1	0.5	1	23	77	100	77	100	0.95
2	16	4.5	6.1e+02	2.7	0.5	8	23	181	196	172	196	0.82
3	16	0.00023	0.031	16.2	0.3	1	23	200	222	200	222	0.98
4	16	0.3	41	6.3	3.7	2	23	258	280	257	280	0.95
5	16	0.0008	0.11	14.5	0.5	1	23	287	310	287	310	0.97
6	16	0.00011	0.014	17.2	4.2	1	23	316	338	316	338	0.98
7	16	3e-07	4e-05	25.3	1.0	1	23	344	366	344	366	0.99
8	16	0.86	1.1e+02	4.9	3.3	1	23	456	479	456	479	0.97
9	16	0.0027	0.36	12.8	1.5	1	23	633	656	633	656	0.94
10	16	0.00065	0.087	14.7	0.3	1	23	753	775	753	775	0.91
11	16	0.0032	0.43	12.6	1.5	1	23	780	803	780	803	0.97
12	16	0.00033	0.045	15.7	1.0	1	23	810	833	810	833	0.95
13	16	0.00068	0.091	14.7	0.3	2	23	841	863	840	863	0.95
14	16	0.00051	0.068	15.1	1.2	1	23	869	891	869	891	0.95
15	16	8.9e-05	0.012	17.5	3.8	1	23	897	919	897	919	0.99
16	16	2.6e-05	0.0035	19.1	1.4	1	23	925	948	925	948	0.97

Sequence Information

Coding Sequence: ATGTTAACAAGATCTTatAAACAAGAAACAGTGGCTACAGCTACGAAAATCAAAGTAGAGCCGAAAGCTGAAGCGACTGTTATGCCTATGGAAGacaaaactgaaaagaaaacagatACAGCACCTCGACCACGCATCAAGCGTCTACTACACAAGCAtctacacaatctgaaaataatCCTAGAATTTACTAATGCCACCATGATACATAAACATGGAGATAAGGGATATTTGTGCTGTTATTGCACGGAAGGTTTCGAAGAACCCATGGATTTAAAAGTACACACTTTAACAGAACATCAAAGTGCTGAAAATTTTTACGGAAACCTTAAAGCCAAAGGACCGTCAATGTTCTTAGTCAAACTTGACATAACGAACCTGAAATGCATGATTTGCAGCACTAATATAGAATCTCTCGAAGATATATTCGTACATCTGACAGAGAAACATGCTAAGGAATTTTATACCGATATAAAAAATCAGATACTTCCATTCAAGTTTAATGCGAAGCAATTAAAATGCTACCAATGTGCTGATGACGTTATTTTCGCCACATTCAGAGCGTTACATGAGCATATGAACAAACACTACCGACACTTCGTTTGTACAGAGTGTGATGCTGGATTCGTCAACAAGTTATCATTATTTAACCATCGCCTCACTCACGCGAAGGGCACTTTCCCCTGCCGGCATTGTCCGGTTGTATTCGACAACGTGCTCAGAAGAAGTAGTCACGAGCTGCGTAGCCACAGTCGTACTGGACATTCAAGTAGATGCCATTTATGTAATGAAAGTTTTAGGGAACACATTgaaaagaaattacatctgtCTACAGTTCATGGCGTTGCCACACCGAAATATGACTGCACCGCGTGTGACAAGAGCTTTTTTACCAACAGTATTCTCAGGGCACATGTCAGGCGGGTCCATCTGATGGAAAAAAGGCACAAATGTTCAGAGTGCGACAAGGCGTTCTTCGACGGTTGTGACCTGAGGAAGCATATGTTGACTCATACGGGAGCGAAGGATTTCAAATGTGAAGTCTGTTCAAAGAGTTTTGCTGAGAAATCTACTCTGAATCAGCATATGAGGATTCATAACAATGATCGGCGTTTCAAATaTACACAAGAAAAACTGGCTACAGTTACGAAAATCAAAATAGAGCCGGAAGCTGAAGAAACTGGTTTGTCTGAAAAAGAGCAAAAAAGAGTAAAtccagagcctgagaaagaGCAAATAAGAGAAAATCCAGAGCCTGGTCGTCGCATACGTACAAAGCGGCTATTTTACAAGCATTTACACAACCTGAAAATAATCCTAGAATTTACTAATGCCACCATGATACTCAAACATGGAGATAAGGGATACCATTGCTGCTACTGCACGGAAGTCTTCCTAGAACCCATGGATCTAAAAGAACACACTTTAACGAAACATCGAAATGAAGACAAATTCTATGGCAGCATTACAGCTAACGGACCATCTAGATTCTTAGTCAAGCTTGACATCACGAACCTAAAATGCATGCTTTGCAGCACTAATATAGAATCTCTCCAAGATATATTTGTACATCTGACAGATAAACACAATAAGGAATTTCATTCTGATatacaaaatcaaatatttcCATTCAAATTCAATGGGAAGGAATTGAAATGCTGTCAATGTACTAATGACGTTGTTTTCGCGACGTTCAGTAGTCGTCTAAATACTGTTGTGAAAGAAGAAACAAATGATAAAGCACTTAATGAAAATATGGATGAAAATGACTTAGTGAATACGCAAAACGAACTTAAAATAACACCAAGAACCGACCTTATAAAACATAGAAGCAACATTAAAGAAATTCTTCTCCATTCTAACGCAACGCCTATAAGGAGGTATGGAGGAATCGGATACACGTGTTGCTACTGCCCAAGCCAATTCGAACAACCTGCTGAACTTAAGAAACACACGCTAGAAAACCACAAAAATATATCAGAGGCAAACTTTATGAAGAGCATGAATATGTCCGAATATGTCGTCAAGTTAGATATAACCTCACTAAAGTGCAAACTATGCCATAGTGATATGGATACTCTAGACAGCTTTACAGACCATCTTCAAAATGTACACGAGAAGAAAATTATCAAAGACTATATGAATCATATTATCCCTTTTAAATTCGGTGACGATTTACTAAGATGCATTTTTTGCTGTAATATTTACAGTAAGTTTAGGACCTTAGTTAGTCACATGCATGTACACTACAGGAATTATATTTGCACTATTTGTGACACCGGATTCGTGAACAGAAACTCTTTGACACAACATTCAGTGAATCACGAAACAGGAGCGTTTGTGTGTGAACACTGCTCTAAAGTCTATCCCACACAAGTAAAGAAACGACTGCATGAAAGGACAGCCCACACACATGTAGATGCCACATATAAATGTGGCTAttgtaaaaaatcttttaaagatTATGGACAAAAGGAAGCTCATGTAACTTCTGTACATGGTGTTGTATCATCAAAAGTTGTGTGTCAAGCATGCAACAAAGTATTTGCAAATAGGAGGAGACTGAACGTTCATATAAAAAAAGACCATTTAATGGAGAGGCCACACAAATGCAAGGAATGCGACATGGCGTTTTATTCCACGACTGGGCTTAAAAGCCATATGGTTGGGCATACAGGGTCGAAGGAATTTCAGTGCTCTGTATGTCTCAAGTGCTATGGAAGGAAAAAGACACTGAATGCTCATATGAAGTCACATGCTGGAGAAAAGAGGTTCAAATGTGAACCCTGTGGACAAAACTTTACGCAGAAAAGCACTTTAAGAGGTCATATGAGATCTAAACATaaagaaattatttaa
Protein Sequence: MLTRSYKQETVATATKIKVEPKAEATVMPMEDKTEKKTDTAPRPRIKRLLHKHLHNLKIILEFTNATMIHKHGDKGYLCCYCTEGFEEPMDLKVHTLTEHQSAENFYGNLKAKGPSMFLVKLDITNLKCMICSTNIESLEDIFVHLTEKHAKEFYTDIKNQILPFKFNAKQLKCYQCADDVIFATFRALHEHMNKHYRHFVCTECDAGFVNKLSLFNHRLTHAKGTFPCRHCPVVFDNVLRRSSHELRSHSRTGHSSRCHLCNESFREHIEKKLHLSTVHGVATPKYDCTACDKSFFTNSILRAHVRRVHLMEKRHKCSECDKAFFDGCDLRKHMLTHTGAKDFKCEVCSKSFAEKSTLNQHMRIHNNDRRFKYTQEKLATVTKIKIEPEAEETGLSEKEQKRVNPEPEKEQIRENPEPGRRIRTKRLFYKHLHNLKIILEFTNATMILKHGDKGYHCCYCTEVFLEPMDLKEHTLTKHRNEDKFYGSITANGPSRFLVKLDITNLKCMLCSTNIESLQDIFVHLTDKHNKEFHSDIQNQIFPFKFNGKELKCCQCTNDVVFATFSSRLNTVVKEETNDKALNENMDENDLVNTQNELKITPRTDLIKHRSNIKEILLHSNATPIRRYGGIGYTCCYCPSQFEQPAELKKHTLENHKNISEANFMKSMNMSEYVVKLDITSLKCKLCHSDMDTLDSFTDHLQNVHEKKIIKDYMNHIIPFKFGDDLLRCIFCCNIYSKFRTLVSHMHVHYRNYICTICDTGFVNRNSLTQHSVNHETGAFVCEHCSKVYPTQVKKRLHERTAHTHVDATYKCGYCKKSFKDYGQKEAHVTSVHGVVSSKVVCQACNKVFANRRRLNVHIKKDHLMERPHKCKECDMAFYSTTGLKSHMVGHTGSKEFQCSVCLKCYGRKKTLNAHMKSHAGEKRFKCEPCGQNFTQKSTLRGHMRSKHKEII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -