Lole008609.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493388.1:25237555-25244961[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.3e-06 0.00031 22.4 0.9 2 23 160 181 159 181 0.98 2 9 1.5e-06 0.0002 23.1 1.6 2 23 189 210 188 210 0.98 3 9 0.00064 0.085 14.8 0.3 1 23 216 238 216 238 0.98 4 9 3.5e-06 0.00047 21.9 2.8 1 23 244 266 244 266 0.97 5 9 2.1e-07 2.8e-05 25.7 0.4 1 23 272 294 272 294 0.98 6 9 6.1e-06 0.00082 21.1 0.4 3 23 302 322 300 322 0.97 7 9 1.5e-06 0.0002 23.0 3.2 1 23 328 350 328 350 0.99 8 9 9.8e-05 0.013 17.3 0.8 3 23 358 378 356 378 0.97 9 9 5.9e-05 0.0079 18.0 2.9 1 23 384 406 384 406 0.97
Sequence Information
- Coding Sequence
- ATGTCTACCGAAATGCCTAGTATTTTAGATTTCAAAAAGATTTGTCGTGTATGCCTGTCGGACACCGGGCCCATGAAAGAATTGTTCATGGTTTGCACATCAGAGATGTTTAAATTCTGCACGTCTGTTGAGGTGGAAGAAGGGGACAATTTGCCTCACCAGATATGTCAAACATGTCTGGATATGTTGAACAAGTCATATTATTTCAAACAAGCAGCTGTACGCTCCAATCTTATTTTAAAACAGCAGGTTTTGGATGAGCAAGAACAAGTGAAAGCGGAGCAGCATACAAATGATCATGAAATCTTAGAAATAAATGTAGCAGAAATCACAGCTGACGTAATGCTCAGTCAGAATGAGAATCTTACACCTGACAATGATACATCGGCAGACCGCTCTATGGACCCCGCTGAAATTATTAGGAGAATAAGAAAACGGAGGGAGCTAGTAAAGCATCTCAAGAAAAGAACTAGAATGAAGTGTCCCAAATGTGAGAAATCATTTCAGAAGTATGAGAACTTTGAAGCACACATGAGGATTCATTTTGGTAAAAAGCCAGATATAAAATGCCAGTACTGTGACAAGGCTTTCCCTACGGTCCGTAACCTTCACAGCCACATCCGCACTCACACAGGGGTCCGCAAATATCAGTGTTTGACTTGTGGCAAGGACTTTGCGTACTTGAATGTTCTGAAGAACCATGAGATGATTCATGCAGGCATTAAGAAGCATGTGTGCCACATATGTGATGCTAGATTCGTGCAGAGTTATAATTTGAAGACCCATCTAGAAACGCATAGTAATCAAAAGAACTACGTTTGTGGACAATGCGGCAAGAAGTTTGCACAGCAAGGCAACCTCAAGACTCACTTGATTAGGCATACAGGCATCAAGAATATAGCTTGCCTTGTGTGCGATATGAGGTTCTATACCAAGggTGACCTCTTCAAGCACATGCGGTCTCATTCTACAGAGAAACCATACTCGTGCCCATACTGTGATAAGAAGTTCAAAAGCCAGAGTTTTAAAGTTCAGCACATGAGAACTCACACAGGTGAACGGCCCTACGGCTGCGACCTTTGCCCCAAGCGCTTCATGTCTCGCAAAGACTTACGGAACCACAGAATGATACACACAGGAGAAAAGCCCCACAAATGCGTGCTGTGCGACCAAGCGTTCATACAGAAGTGCGCTCTGAACAGACATATGAAAGGACACATGCAGAAGGATGCAGAGAATGTAGACAAACCACAGAATATACTGCTAAGGGCTAGGTTACAAGGGAGTGTAGCAGAGTATTCTCAATGGAATATGATGTCTGATGAAGATCTTCAGAAGTAA
- Protein Sequence
- MSTEMPSILDFKKICRVCLSDTGPMKELFMVCTSEMFKFCTSVEVEEGDNLPHQICQTCLDMLNKSYYFKQAAVRSNLILKQQVLDEQEQVKAEQHTNDHEILEINVAEITADVMLSQNENLTPDNDTSADRSMDPAEIIRRIRKRRELVKHLKKRTRMKCPKCEKSFQKYENFEAHMRIHFGKKPDIKCQYCDKAFPTVRNLHSHIRTHTGVRKYQCLTCGKDFAYLNVLKNHEMIHAGIKKHVCHICDARFVQSYNLKTHLETHSNQKNYVCGQCGKKFAQQGNLKTHLIRHTGIKNIACLVCDMRFYTKGDLFKHMRSHSTEKPYSCPYCDKKFKSQSFKVQHMRTHTGERPYGCDLCPKRFMSRKDLRNHRMIHTGEKPHKCVLCDQAFIQKCALNRHMKGHMQKDAENVDKPQNILLRARLQGSVAEYSQWNMMSDEDLQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00952061;
- 90% Identity
- iTF_01527585;
- 80% Identity
- -