Lole034404.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lacanobia oleracea
Gene Symbol
-
Assembly
GCA_950371165.1
Location
OX493406.1:16877435-16900905[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 4.9e-05 0.0066 18.3 6.9 1 23 191 213 191 213 0.98
2 13 2.7e-06 0.00036 22.2 0.2 3 23 227 247 226 247 0.98
3 13 7.7e-05 0.01 17.7 2.0 2 23 256 277 256 277 0.98
4 13 0.00031 0.041 15.8 1.5 3 23 285 305 283 305 0.95
5 13 9e-06 0.0012 20.6 1.6 1 23 311 333 311 333 0.98
6 13 1.3e-05 0.0018 20.1 8.5 2 23 340 361 339 361 0.97
7 13 6.6e-05 0.0088 17.9 0.8 1 23 367 389 367 389 0.98
8 13 2.6e-06 0.00034 22.3 1.2 1 23 395 417 395 417 0.99
9 13 0.00035 0.046 15.6 1.4 1 23 423 445 423 445 0.98
10 13 0.0074 0.99 11.4 2.1 1 23 451 473 451 473 0.97
11 13 3.7e-06 0.0005 21.8 0.7 1 23 479 501 479 501 0.98
12 13 1.2e-06 0.00017 23.3 0.6 1 23 507 529 507 529 0.99
13 13 0.0002 0.027 16.3 2.6 1 23 600 622 600 622 0.99

Sequence Information

Coding Sequence
ATGGCTGCTCCGCATAAACCTTTGAAATTCGACAAAATATGTCGCGCTTGTTTAGAGATAAAAAAAGACATGAGACCCCTGTTTGAGCAACTCACAGCGACAATGCTGATGAGTGTATCGAAAGTGCAGGTGGCTGTTGGCGACGGTCTACCTCCACAACTGTGCCTGCAGTGCGTGCACCAGATCTCGCGGTGCCACGCCTTCAAGGACCTGGTTGAGAGGAATGACGTCACGCTGCGGGAGCACGCCGCAAGGATGGCAGAGGAGGCTTATAAGAGGGAGAGGGAAGAGAAGGAGAAGCTCCTGACCCTGAACTGCACGGAGCCTTACATGCAGTACATGGAGGTCCCGCTCAGCAACACGAGTCAGATCCTGGACGGGTTCTTCACGGGCACACCTGACCAGCCTCCGGCCGACACAACGGAGACGGAGATGAAACAAGATTTCGATGTTGAAAAGCTGGACCCAGACCTCGTCGATATGAAAGACAAAGAAGCCCTAAACTCAGATGAAGAAAACTACCTGCAACTGGTGCTGTTCCAAGCGACGTCCACGGTGTCTCCCGGGCGCCACGTCTGCAACCTCTGCCACAAGGAGTTCAAGCATGCGCGCTGGCTGAAGCAGCACATGCGCTCCCATACGAATTGGATCAAGGCCAACTGTAAGAAGCCGCCCATGTGTCCCATCTGTGAAAGGACTTTTAAGGGACCCGGCATGCTAAAGATGCACATGCGCACGCACGAGCAGCGTCCAGCCAAGCAGCCCACCTGCTCCGTGTGCCAGCGGACCTTCCCCAGCAAGACGCTGCTCTACCGCCACAGACAGACGCACTTCGAGCAGAAGACGCACCTGTGCTCTGTGTGCGACAAGCGCTTCTACAGCGGGTACGCGCTGCGCTCGCACATGGCGCGCCATCGCGGGGAGCGGCCCTTCGTCTGCACCACGTGCAACAAGAGCTTCTATAACCCCACAGATCTGAAGGTGCATTTCCGGCTGCACACGGGCGAGAAGCCGCTGAAGTGCAACGAGTGCAACAAGACGTTCCGGCGGCACTCGACGCTATGCCAGCACATGAAGAAGCACCGCGGCATCCGCAACCACGTGTGTACCGTCTGCAGCAAGGGCTTCTACGAGGTGTCCAAGTTGAACGCACATATGAGAGTGCATACAGGCGAGCGTCCGTTCGAGTGCCAGTACTGCGAGCGGCGCTTCGCGCAGCAGTCGGCGCTCATCTACCACCGGCGCACGCACACGGGCGAGAAGCCCTACAGCTGCAAGATCTGCTCCGCGCGCTTCACCACCTCCTCCGCCAGGAACAACCACACGCTCACGCACACCGGCAACAAGAGGTTCGTCTGCTCAATCTGCCTCAAAGGCTGCACATCGCGCACAGAGCTACGCGTGCACTCCAGCAAGCACACGGGAGAGAAGCTGTTCGAGTGCCAGCAGTGCGGGCAGCGGTTTAGCTCGGCCTCCTACCTCGCCGTGCACCGCCGCTACCACACCGGCGAGAAGAAGTACCAGTGTCCCGTATGCGGGAAGGGATACATAGAATCCAGCTCGTACAAGAAGCACTTGAAGACGCACGCGAACAAGACGGAGCCGGAGCCCTCGGCCTGCGACAGTAGCGCCGAGGCCGCGCCGGGCAAGGCGGAGTGTCTGGCGGAGCACCAAGCTGTCTCCGCCACGGAGGACCTGCCTGATGCGCCCAATCAAGTTCAACCGCAAGTCCAGATCCAGGTGCAAGCCAGCCAGGTGCAGGGGCAGGCCGAGCGGCCGCCGCAGAGGGGCGCGCGCTACAAGTGCGGGCTGTGCGTCAAGACCTACATGTACCTCCACAACCTGAAGAAACACATGCTGGTGCATGAACAGGAAAACGGCCGTAACTCGGAGCCAATAATATTCTTGCAACAGCAGCAAcctcaacaacaacaacagcagcagcagcaacaacaacagcagcagcaacaacaacagcagcagcaacaacaacaacaacaacatcagcAGCAACAGCAACAACGCCAGCAGCAACAACAAGTACAACAACAACACCAGCAACAGATGCAGCAACAACACCAAGTCCAGCAACAACAAGTTCAAGTGCAACATCACCAGCAACAGCAACAGTTGCAGCAACAAGCGGTGTTGCAGGTCGGCAACGTGCAACAGTTGGCTGTTCCCATACATGCGCAACATGTTCAGCAAGGGATCACTGTTTCTGGAGTACAGAGCCAGCACCCGTACCCGGTGATCTCGTCGGTGCAATCTCTGCAGCTGCAGCAGACACAACAGGTTAACACGCAACAGCCGCAGCAGCTTCAAGTACAAACCATACAGATACATCCGCAACATCAACCTATACAAATACATGCGGTGGGCGTGCAGCAAGTGCAGCAGCAGCAGCTACACGTGGCCACCTCCTCCTGCCAGACCATGCTGCCCAATATACTGCAGCTGCAACCAGCGACAGTGGCGGTGTCCGGGCTGTCGCAGCAGGAGCTGGGCGGCGTGACGCACCGCATCATCCTGCAGCCGCAGCCCTCGGCCGCCCACCCCGCCGTCTACACGATCCACCACTGA
Protein Sequence
MAAPHKPLKFDKICRACLEIKKDMRPLFEQLTATMLMSVSKVQVAVGDGLPPQLCLQCVHQISRCHAFKDLVERNDVTLREHAARMAEEAYKREREEKEKLLTLNCTEPYMQYMEVPLSNTSQILDGFFTGTPDQPPADTTETEMKQDFDVEKLDPDLVDMKDKEALNSDEENYLQLVLFQATSTVSPGRHVCNLCHKEFKHARWLKQHMRSHTNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEQRPAKQPTCSVCQRTFPSKTLLYRHRQTHFEQKTHLCSVCDKRFYSGYALRSHMARHRGERPFVCTTCNKSFYNPTDLKVHFRLHTGEKPLKCNECNKTFRRHSTLCQHMKKHRGIRNHVCTVCSKGFYEVSKLNAHMRVHTGERPFECQYCERRFAQQSALIYHRRTHTGEKPYSCKICSARFTTSSARNNHTLTHTGNKRFVCSICLKGCTSRTELRVHSSKHTGEKLFECQQCGQRFSSASYLAVHRRYHTGEKKYQCPVCGKGYIESSSYKKHLKTHANKTEPEPSACDSSAEAAPGKAECLAEHQAVSATEDLPDAPNQVQPQVQIQVQASQVQGQAERPPQRGARYKCGLCVKTYMYLHNLKKHMLVHEQENGRNSEPIIFLQQQQPQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQRQQQQQVQQQHQQQMQQQHQVQQQQVQVQHHQQQQQLQQQAVLQVGNVQQLAVPIHAQHVQQGITVSGVQSQHPYPVISSVQSLQLQQTQQVNTQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPATVAVSGLSQQELGGVTHRIILQPQPSAAHPAVYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01094252;
90% Identity
iTF_00906378;
80% Identity
-