Basic Information

Insect: Lacanobia oleracea
Gene Symbol: -
Assembly: GCA_950371165.1
Location: OX493404.1:978809-991230[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 8.6 1.2e+03 1.8 0.1 9 23 178 193 168 193 0.75

2 28 0.039 5.2 9.1 3.0 2 23 242 263 241 263 0.96

3 28 0.39 52 6.0 0.3 6 23 275 293 275 293 0.97

4 28 0.12 16 7.6 0.2 2 23 304 326 303 326 0.92

5 28 1.5e-07 2.1e-05 26.1 1.0 2 23 349 370 349 370 0.97

6 28 0.00013 0.018 16.9 2.0 1 23 376 399 376 399 0.96

7 28 0.034 4.6 9.3 0.1 3 23 407 427 405 427 0.95

8 28 1.2e-05 0.0015 20.2 2.1 1 23 433 455 433 455 0.99

9 28 0.56 75 5.5 2.8 1 23 581 603 581 603 0.94

10 28 0.0013 0.18 13.8 3.7 2 23 610 632 609 632 0.92

11 28 1.2e-05 0.0016 20.2 3.3 1 23 638 660 638 660 0.98

12 28 2.4e-06 0.00032 22.4 4.4 1 23 666 688 666 688 0.98

13 28 0.00023 0.031 16.2 0.2 1 23 694 716 694 716 0.98

14 28 0.002 0.27 13.2 1.0 1 23 722 744 722 744 0.94

15 28 0.0023 0.31 13.0 0.4 1 23 750 773 750 773 0.93

16 28 3.5 4.7e+02 3.0 0.1 2 23 827 847 827 847 0.91

17 28 0.00085 0.11 14.4 0.3 1 23 853 876 853 876 0.94

18 28 2.3e-06 0.0003 22.5 3.3 1 23 882 904 882 904 0.96

19 28 7.2e-05 0.0096 17.8 0.1 1 23 910 932 910 932 0.98

20 28 0.00053 0.071 15.0 0.0 2 23 938 959 937 959 0.95

21 28 0.0051 0.68 11.9 0.5 6 23 969 986 968 986 0.98

22 28 1.9 2.5e+02 3.9 1.6 1 23 1048 1069 1048 1069 0.94

23 28 0.036 4.8 9.3 0.4 2 23 1278 1300 1278 1300 0.96

24 28 2.6e-05 0.0034 19.2 1.6 1 23 1306 1328 1306 1328 0.97

25 28 0.00017 0.022 16.6 1.4 1 23 1334 1356 1334 1356 0.98

26 28 0.054 7.2 8.7 0.3 3 23 1364 1384 1362 1384 0.95

27 28 0.00043 0.058 15.3 0.2 1 23 1390 1412 1390 1412 0.94

28 28 0.00072 0.097 14.6 0.2 1 23 1417 1440 1417 1440 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	8.6	1.2e+03	1.8	0.1	9	23	178	193	168	193	0.75
2	28	0.039	5.2	9.1	3.0	2	23	242	263	241	263	0.96
3	28	0.39	52	6.0	0.3	6	23	275	293	275	293	0.97
4	28	0.12	16	7.6	0.2	2	23	304	326	303	326	0.92
5	28	1.5e-07	2.1e-05	26.1	1.0	2	23	349	370	349	370	0.97
6	28	0.00013	0.018	16.9	2.0	1	23	376	399	376	399	0.96
7	28	0.034	4.6	9.3	0.1	3	23	407	427	405	427	0.95
8	28	1.2e-05	0.0015	20.2	2.1	1	23	433	455	433	455	0.99
9	28	0.56	75	5.5	2.8	1	23	581	603	581	603	0.94
10	28	0.0013	0.18	13.8	3.7	2	23	610	632	609	632	0.92
11	28	1.2e-05	0.0016	20.2	3.3	1	23	638	660	638	660	0.98
12	28	2.4e-06	0.00032	22.4	4.4	1	23	666	688	666	688	0.98
13	28	0.00023	0.031	16.2	0.2	1	23	694	716	694	716	0.98
14	28	0.002	0.27	13.2	1.0	1	23	722	744	722	744	0.94
15	28	0.0023	0.31	13.0	0.4	1	23	750	773	750	773	0.93
16	28	3.5	4.7e+02	3.0	0.1	2	23	827	847	827	847	0.91
17	28	0.00085	0.11	14.4	0.3	1	23	853	876	853	876	0.94
18	28	2.3e-06	0.0003	22.5	3.3	1	23	882	904	882	904	0.96
19	28	7.2e-05	0.0096	17.8	0.1	1	23	910	932	910	932	0.98
20	28	0.00053	0.071	15.0	0.0	2	23	938	959	937	959	0.95
21	28	0.0051	0.68	11.9	0.5	6	23	969	986	968	986	0.98
22	28	1.9	2.5e+02	3.9	1.6	1	23	1048	1069	1048	1069	0.94
23	28	0.036	4.8	9.3	0.4	2	23	1278	1300	1278	1300	0.96
24	28	2.6e-05	0.0034	19.2	1.6	1	23	1306	1328	1306	1328	0.97
25	28	0.00017	0.022	16.6	1.4	1	23	1334	1356	1334	1356	0.98
26	28	0.054	7.2	8.7	0.3	3	23	1364	1384	1362	1384	0.95
27	28	0.00043	0.058	15.3	0.2	1	23	1390	1412	1390	1412	0.94
28	28	0.00072	0.097	14.6	0.2	1	23	1417	1440	1417	1440	0.94

Sequence Information

Coding Sequence: ATGAATAATGCAACCGAACATATATTTCTATTAAATCCTACATCGAGTCAGTCTTCGGAACCTATGCAGAGAATTGGCGCCCTGGCACCGCCGCCCTCACAAGTAAACCTCGAAAATGTCAAGGACTTCTCACATGTTTGTCGGACATGCGCCACTATCACAGAATGTGTTATGCCCATATATGCTGGTGAGGGGCTGCAGAACAACTTGGCTGATAAGATAAAGCAACACTTACCAATACAgGTAAGTAAGAGCGACGAGCTGCCTCTGGTGGTGTGCTACCAGTGCGCCAGCACCCTGCTGGCATTCCACGAGCTGGTCAAGTGCTGCGAGCAGGCCGACGCCGCGCTGCACGCCAAGCTGCGCTCCAACCAACGGAAATTAAATGGAGCATTAAACACGAAAGAAGAGGATGGCGAGAGCAAATTATTTTACACGAGTGTCAGAAAAGCTCTCGCTAACATTCATATTGATCTAGACGAAGAGGACACCGATGTGCAGATAGTTTGCCAGAAGTGTGAGGAGAAGCCAGCACTGAGTACTGTATACAGCCTGGCTAACCATATCAGATCGGACCACTCTCCTGATGTACTCGACAACTCCATTAAGACATTTATCACTGAATACATAACGTTTGAACAAGTGCTAGCGGCTTCGGACGATTCTGAAATAGAAACGGTATCAGTAATAACAGAGAAAACTCGTATAGTCCTGCCATCCTTGCACTGTCCGTTCTGTTCGAATGTGTTCTCGTCGGCCACGCGGCTCGCGCATCACCTCAACAAGCACGAGCCGGTGAGCGCGGCGGACAGCATCACGTGCTGCGACCGCCGCTACAGCGACAAGAAGATGTTCGTGCAGCACTGGCAACGAGCTCACCTCGCCAGCACAGCCCACGACCAAGCTAAAGTATGCGTCAGCTGTGACTTTACAACTGACACAGCAGACGAACTGAAACAGCATTATAAAGACGCGCATAATGATCCGTTCTTTACGAAAGAGAAAAAGACAGAGCGTCCAAACAACCAGAAGTACATCCCGGCGGTGTGTCCCGAGTGCAACAAGACGTTCTCCAACAAGTACAACATGTTCGCGCACATGCGCAGCCACTCGCGCTCCGCCGCGTACCCGTGCGACCAGTGCAGCCGCACGTACCGCAGCCAGGGGAACCTCAGCCACCACAAGAGGCTGGCGCACCAGGGGATACTGAACCACCTCTGTGTGGAGTGCGGGGAAGCCTTCCCCAGTCGGTCCGAGCGCGACATACACGCGCGCATTCACTCGGGAGAGACCCCCTACAAGTGCCCGCACTGCGGCAAGTCGTACCGCGCCAAGAACACGCTCTCACAACATCTACAGATACACGCAGGCATACGCAAACACGAGTGCAAGATCTGCTCCAAAAAGAGCCCCTGCTCGCCCGAGGAGCCCCGCTCTGCCTCTGACCCCGAGCTCTCCGATAACGAGCCACTGGCCACGTTCGCAACCAAAAAGTCCGCAAATCTCTATACGAATTTCTACCGAGCACTCGTGAACTTTAGAAACCATTTTGTTAGTGATCAACATCATGAGGATTATCCTGACTTTACGGACTCGAGCGTGTCCGAGACAGAGCAGCACGAGGCCGACGTGGACAAGTTCGACGACCTCACGCAGAGCAACATGCGGCGCGACCGCCTGGACGAGGACACGCGGCGCGAGCTGCGCGCCGTGCAGCTGCGCCTGGACAACAAGACGTACTACACGTGCCGCGTGTGCGGCAAGCACCTGAGCTCGGCGCACACGTacgtgttccacgcgcgcatccACACGGGCGAGCGGCCGTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCGCACGGCCTGCAGCGGCACCTGACCGAGACGCACGAGCGCGTGCGCCGCTACAACTGCCACCTCTGCACCAAGAACTTCGCCAACTCACAGAACCTCAAGCAGCACCTACGAATACATACGGGGGAGAAGCCTTTCGTTTGTTCTCATTGCGGGAAGAGGTTCACGCAGAGCGGTTCGTTACACGTGCATCTGAAGACTCACAGTGACCAGTTCCCTTACGAGTGCGCGGAGTGCGGGGCTAAGTTCAGACTGCGATCCGGGCTAGTGCGGCACAGACTGAAGCACACGGGCGAGCGGCCGCACGTGTGCGCGACGTGCGGCGCCGGCTTCCGGCAGCGGCACGAGCTCACGACGCACACCGCCGCGCACggcggcgccgcgccgcacgcCTGCGCCGCCTGCCCGCGCGCCTTCCGCCAGCGCCGCGCGCTGCGCCTGCACGTGCGGCGCGCGCACGAGCCGCAGCCGCCCGACTATCATTACACCGATCCCATCCTTTCCCTTTCCAGGACGGTAGTGCCAGAAGAAGGAAACGTGCAAGAAGATGACAAAACTAAAGTTGAGATCATCGAGAAACCGGAGTTCACTATAGGCGAGAACGGGAAGCGATACGCGAAGTGCGGCGTGTGCCAGAAGAGCGTGTCGGTGGGCGGCTGGCGGCGGCACGCGCGCGCGCACGGCGGCGAGCGGCGCCACTCGTGCCACGCGTGCGGCCTGGCCTTCGGCGACAGCGGCAACCTGGCCCGCCACGCGCGCGCGCTGCACGCCGGCCAGCGCGCGCACGCCTGCCCCGTCTGCCAGAAGACATTCTCACGGAAGTCCCACTTAGAAGACCACGTTAAGTCGCACTCGGAGAGTCGTACGTTCGTGTGCGACGTATGCGGCAAGGGCTCCAAGTCGAGCGCGGCGCTCCGCATGCACGCGCGCACGCACGGCGCGCCGCAGCTGCCGTGCGCGCAGTGCGGCGCGCGCTTCAAGCGGCGCGCCGAGCTGCGCGCGCACGCCTCCGTGCACAGCGGCGAGCGGCCGCACGCCTGCGCCTGCGGGAGGAGCTTCCGGCTGCGCAGCCAGCTCAAGGCACATAGCAGGCTGCATCAGGAGACCAGGGATCACGAAATACAAGATTTAAACAATGCTGGCAATTTTGATGTAGGTGGTGACTGCAGAATCACTTGTTGCAGGGCGCTGCCGGAGTACCGCGCGTGCGTGTACTGCCCCACGGCGCATCCCGCGCACTCGTACGAGCAGCACCTGGTGCTGGTGCACGGCGACCTGCTGTTCCACTGCGAGCTGTGCGACCTGTTCGTGGACCGCAAGGACTTCATCGTGCACATGTCCTACCACACGCTGCAGTACGACGCCGAGGACAGACTCCGGAAGATGCGGAAGAAGAAAGAAGCTGCCAGCTCGCAGCCCCGCCCCCCTGCTGCAGCGCCTGCCCCTCCGGCTCCGACTCCTGCTCCCCAGGTTAAACACAAAACAGAAACCAAACCACTCATTGTTAAAGTCGAAGCCAAGAAGCCCGCAGTGCCTGCTAAAACCAAAACGAATGTCCAAGTGAATGAGTTCTCGGACCACAGCGATATGGACGAGTTCGGACCTCTGCCCGAGTCCGTGTTCGAAGCTATCGAGGACACACAAGACAGCCAGCATTTAGAAGATAATACTAGTCAAACGCTTGATAATGAGCGACTCAATGAAGAATCCAACAAATCGTCCCCAACAGAAAATACAAATTCAAGTAATCCTGGCCAGTGTTCggaaaataataacagcgtCACAACTAattgttcagtagttttagagCCTATCAACATAAACAGCTTTGGCCGAAGTACGAATGTAGTCATTAAAAATACGAGTAGTAATACAAGCAATAATCCTGTTCCGCCAGCCGCTAAAACAGCCCCAAACACTGCCGATAGTCAACCGACTGTATTGGGGAAGAGAAACAGGAACAAGTTACGTAAATGTCCCCTCTGTCCTAAAGAATACGAGGCGTCCTCCAGCTACTTCTATCACCTGAAATACACCCACAAGAGCAGCAAGGAGCACGAGTGTGAGGTGTGCGGCCGGAAGTTCGGCACCAAATCGTGTCTGGCGCAACACATGGCCGTCCACACGGGGCAGTACGAGTTCGAGTGCAAGCAGTGTCAGAAGCAGTTCAAGTCGAAGGCCGGGCTGTACATCCACGAGCAGACGCACGGCGCGAACAAGGCGTGGGCGTGCAGCCAGTGCGGGGCCGCCTTCCGCTGGCGCACGCACCTGCTGCGACACGCGGCGCGGCACGCCGGCGTGCGCGCCCACGCCTGCGCCGCGTGCGGCCGCGCCTTCAGCGTGCGCGCCGACCTGCTGCGCCACGCGCGCACGCACGCCGCCGGCAGCTTCGCCTGCGACCAGTGCGGACAGAAGTTCGCTCAGCGGCGCTACTTAGCGGTGCACGTCGCGAAGCAGCACAACACGAGCGTCAGGAAGTCTAAGTAA
Protein Sequence: MNNATEHIFLLNPTSSQSSEPMQRIGALAPPPSQVNLENVKDFSHVCRTCATITECVMPIYAGEGLQNNLADKIKQHLPIQVSKSDELPLVVCYQCASTLLAFHELVKCCEQADAALHAKLRSNQRKLNGALNTKEEDGESKLFYTSVRKALANIHIDLDEEDTDVQIVCQKCEEKPALSTVYSLANHIRSDHSPDVLDNSIKTFITEYITFEQVLAASDDSEIETVSVITEKTRIVLPSLHCPFCSNVFSSATRLAHHLNKHEPVSAADSITCCDRRYSDKKMFVQHWQRAHLASTAHDQAKVCVSCDFTTDTADELKQHYKDAHNDPFFTKEKKTERPNNQKYIPAVCPECNKTFSNKYNMFAHMRSHSRSAAYPCDQCSRTYRSQGNLSHHKRLAHQGILNHLCVECGEAFPSRSERDIHARIHSGETPYKCPHCGKSYRAKNTLSQHLQIHAGIRKHECKICSKKSPCSPEEPRSASDPELSDNEPLATFATKKSANLYTNFYRALVNFRNHFVSDQHHEDYPDFTDSSVSETEQHEADVDKFDDLTQSNMRRDRLDEDTRRELRAVQLRLDNKTYYTCRVCGKHLSSAHTYVFHARIHTGERPCVCHVCGKQFRAPHGLQRHLTETHERVRRYNCHLCTKNFANSQNLKQHLRIHTGEKPFVCSHCGKRFTQSGSLHVHLKTHSDQFPYECAECGAKFRLRSGLVRHRLKHTGERPHVCATCGAGFRQRHELTTHTAAHGGAAPHACAACPRAFRQRRALRLHVRRAHEPQPPDYHYTDPILSLSRTVVPEEGNVQEDDKTKVEIIEKPEFTIGENGKRYAKCGVCQKSVSVGGWRRHARAHGGERRHSCHACGLAFGDSGNLARHARALHAGQRAHACPVCQKTFSRKSHLEDHVKSHSESRTFVCDVCGKGSKSSAALRMHARTHGAPQLPCAQCGARFKRRAELRAHASVHSGERPHACACGRSFRLRSQLKAHSRLHQETRDHEIQDLNNAGNFDVGGDCRITCCRALPEYRACVYCPTAHPAHSYEQHLVLVHGDLLFHCELCDLFVDRKDFIVHMSYHTLQYDAEDRLRKMRKKKEAASSQPRPPAAAPAPPAPTPAPQVKHKTETKPLIVKVEAKKPAVPAKTKTNVQVNEFSDHSDMDEFGPLPESVFEAIEDTQDSQHLEDNTSQTLDNERLNEESNKSSPTENTNSSNPGQCSENNNSVTTNCSVVLEPININSFGRSTNVVIKNTSSNTSNNPVPPAAKTAPNTADSQPTVLGKRNRNKLRKCPLCPKEYEASSSYFYHLKYTHKSSKEHECEVCGRKFGTKSCLAQHMAVHTGQYEFECKQCQKQFKSKAGLYIHEQTHGANKAWACSQCGAAFRWRTHLLRHAARHAGVRAHACAACGRAFSVRADLLRHARTHAAGSFACDQCGQKFAQRRYLAVHVAKQHNTSVRKSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -