Basic Information

Transcription Factor Domain

TF Family: SAND
Domain: SAND domain
PFAM: PF01342
TF Group: Other Alpha-Helix Group
Description: The DNA binding activity of two proteins has been mapped to the SAND domain. The conserved KDWK motif is necessary for DNA binding, and it appears to be important for dimerisation [1]. This region is also found in the putative transcription factor RegA from the multicellular green alga Volvox cateri. This region of RegA is known as the VARL domain [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.0031 79 4.5 0.0 23 41 44 62 34 65 0.86

2 4 0.0031 79 4.5 0.0 23 41 114 132 104 135 0.86

3 4 0.0031 79 4.5 0.0 23 41 184 202 174 205 0.86

4 4 0.0031 79 4.5 0.0 23 41 254 272 244 275 0.86

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.0031	79	4.5	23	41	44	62	34	65	0.86
2	4	0.0031	79	4.5	23	41	114	132	104	135	0.86
3	4	0.0031	79	4.5	23	41	184	202	174	205	0.86
4	4	0.0031	79	4.5	23	41	254	272	244	275	0.86

Coding Sequence: ATGGACGGACACCACGAACAGCATCCAGCAGCGCGCGAACTGGATGACTCCCCTGGCCACCCGGGCGGCCCACTGCCTCTCCTCGGAGCTGACACTGGTACTACTAACCTGGGTCTGAGCCCCCGTCCCCTGTCACAGCGCTCCACCACGAACAGCATCCAGCAGCGCGCGAACTGGATGACTCCCCTGGCCACCCGGGCGGCCCACTGCCTCTCCTCGGAGCTGACACTGCATCCAGCAGCGCGCGAACTGGATGACTCCCCTGGCCACCCGGGCGGCCCACTGCCTCTCCTCGGAGCTGACACTGGTACTACTAACCTGGGTCTGAGCCCCCGTCCCCTGTCACAGCGCTCCACCACGAACAGCATCCAGCAGCGCGCGAACTGGATGACTCCCCTGGCCACCCGGGCGGCCCACTGCCTCTCCTCGGAGCTGACACTGCATCCAGCAGCGCGCGAACTGGATGACTCCCCTGGCCACCCGGGCGGCCCACTGCCTCTCCTCGGAGCTGACACTGGTACTACTAACCTGGGTCTGAGCCCCCGTCCCCTGTCACAGCGCTCCACCACGAACAGCATCCAGCAGCGCGCGAACTGGATGACTCCCCTGGCCACCCGGGCGGCCCACTGCCTCTCCTCGGAGCTGACACTGCATCCAGCAGCGCGCGAACTGGATGACTCCCCTGGCCACCCGGGCGGCCCACTGCCTCTCCTCGGAGCTGACACTGGTACTACTAACCTGGGTCTGAGCCCCCGTCCCCTGTCACAGCGCTCCACCACAAACAGCATCCAGCAGCGCGCGAACTGGATGACTCCCCTGGCCACCCGGGCGACCCACTGCCTCTCCTCGGAGCTGACACTGGTACTACTAACCTGGGTCTGA
Protein Sequence: MDGHHEQHPAARELDDSPGHPGGPLPLLGADTGTTNLGLSPRPLSQRSTTNSIQQRANWMTPLATRAAHCLSSELTLHPAARELDDSPGHPGGPLPLLGADTGTTNLGLSPRPLSQRSTTNSIQQRANWMTPLATRAAHCLSSELTLHPAARELDDSPGHPGGPLPLLGADTGTTNLGLSPRPLSQRSTTNSIQQRANWMTPLATRAAHCLSSELTLHPAARELDDSPGHPGGPLPLLGADTGTTNLGLSPRPLSQRSTTNSIQQRANWMTPLATRATHCLSSELTLVLLTWV

Sequence clustering based on sequence similarity using MMseqs2