Lole033284.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493405.1:20920709-20921269[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.9e-07 0.00012 23.2 0.0 1 30 15 44 15 45 0.96
Sequence Information
- Coding Sequence
- ATGCCGCATAATTATAAAAGGACTACTTCTAGACAAGAATGGGATCCGGATAACATGAAAAAAGCCGTTCAAGCCGTATTTGATGGCACCATGGGTTACTTGAAAGCGGCCAAAACTTTTGAGGTTAATAAACTAGCAGGAGAAGATTGGTTAGCTGGGTTCATGAAGCGACACCCACAATTATCACTGCGTGCTGCCGAGCCAACGTCGGTGGCGAGAGCGATGGGATTTAACATGGTCAGTGTCAACAAATTTTTTGATTTGCTAGAAAGAGTTATAGATCAATATATTTCTGCCAACACACATTTACAATGTGGATGA
- Protein Sequence
- MPHNYKRTTSRQEWDPDNMKKAVQAVFDGTMGYLKAAKTFEVNKLAGEDWLAGFMKRHPQLSLRAAEPTSVARAMGFNMVSVNKFFDLLERVIDQYISANTHLQCG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -