Lole009181.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493389.1:5296667-5304009[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.2e-07 0.00013 23.1 0.0 16 42 28 54 15 57 0.80 2 2 8.9 2.6e+03 -0.3 0.0 25 30 250 255 249 256 0.87
Sequence Information
- Coding Sequence
- atggttaacaaatataaaagaaaaacctCTAATGCATCATGGGACGAGGCAGTTATGAAACTTGCTATGGAAGAAGCTAGCAAAACCTCAGTGAAAGGTGCGGCTAAGAAGTACGGTATAAACTTATCCACGTTGCAGCGGCACATCAAAAAAGGATGCCCGAAGAAGAAACTTGGCAGGTACACAACTGTATTCACGGATCCTCAGGAACTCGAGCTTCTTGAATATGTGTTTCATATGGAAGGTTTGTTTTTTGGACTGACCAAGAAAGAATTCTTAGAACTCatgacTATGTTTGTCCGAGTCCTGCTGTTCACCTGCGCTTGCGCACTGAGCGCGGCTGAAGTGCCGCACTACGGAGATATTGCGGAAAGCATACTAAAAGCGCATAAAAAAATAGTGGAcaatatattATCCATGGATGGCAACGTACCGCTTCTGAACGACCCCCGGCGCCACTATGCCGAGATTATGTACGTTGTTCATTATGAGGCTGAAAAAGAAACAAGCTGCAGCTTAGGTCATGATTATTACGAAAACTATCAGAGAAACATTAACGAAGCAGCACCTTTCGCTATTGCTAATCCACAAAAGGTGGTCGATGGAACTAAAAAGGTGATCCAGGACATCCTTGACAGCGTCGGAGAGTTGTTACAACTGATAAAAGCGAAAACACAAGCAATGGCAGACCGCAACCAGCAGAACATTGATGAAGCCATTGATGAAGAAATTAATAACGACATTGAGAAATATGGAATTCCAAGAAAGGAAACGGCTAATTTGGACCTGTTCACTAGCTTGTGA
- Protein Sequence
- MVNKYKRKTSNASWDEAVMKLAMEEASKTSVKGAAKKYGINLSTLQRHIKKGCPKKKLGRYTTVFTDPQELELLEYVFHMEGLFFGLTKKEFLELMTMFVRVLLFTCACALSAAEVPHYGDIAESILKAHKKIVDNILSMDGNVPLLNDPRRHYAEIMYVVHYEAEKETSCSLGHDYYENYQRNINEAAPFAIANPQKVVDGTKKVIQDILDSVGELLQLIKAKTQAMADRNQQNIDEAIDEEINNDIEKYGIPRKETANLDLFTSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -