Lole035044.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493407.1:4498037-4499044[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0004 0.12 13.6 0.0 17 44 93 120 91 121 0.90 2 2 0.0012 0.36 12.0 0.1 17 40 129 152 128 156 0.90
Sequence Information
- Coding Sequence
- ATGGCTGCTGCGAGGAGAGAATACACCCAACGGGAGTATGCAGAAATGCATTACCTGTATGGCTTTTGCGACGGTAATGCCCGGGCTGCTGCTAGGGAATATCGTCAACGCTACCCTAACCGTGATCGTTTTCCGGACTACAGGGTCTTTATGCGCGTACATAATTCATACATGGAGGGAGTCTTACCCGGTCAGCATGCTCCGAGAGCAGGCAGACCagtggtgcgatttgaaaatgaAGATGAAGTGCTGAGAGAATTAAGATTGGATCCTAGTATAAGTCAACGCCAAATATCCCGTAATCTCGGGATTCCAAGATCGACGGTGCAACGTGTCATTAACAGAAACAGAGAAGTGCTGAGAGAATTAAGATTGGATCCTAGTATAAGTCAACGCCAAATATCCCGTAATCTCGGGATTCCAAGATCGACGGTGCAACGTGTCATTAACAGAAACAGATATCACGCCTACCACGTGCAAAGGGTGCAAGCTTTGCTGCCCAGTGACTATGAACCTAGAGTGCGGTTTTGCAGAGAGATGCTAAGATACCACAGAGAGGATCCGCAGTTCTTCAACAAGGTTTTATGGACGGATGAGTCAACTTTTAGAAGAATGGGAGTATTCAATATCCACAATCTACATTTTTACTCCAGAGTGAACCCCCATATCATAAGAAATGATCGATTCCAGCATCTGTTTGGTATTAACATGTGGGCTGGTATAATTGGCCAGCAGTTGGTGCTACATGAAATGCCAGCAAGGCTGAATGGTGCtcagtatttaaattttttgcaaaataatttaaaccatATTCTTAACGAAGCTGAAGTTCCAGAAGAAAGAATAGCAGAAATGTGGCTGCAACATGATGGCGCCCCGCCTCACTACGCTCAAGCAGTTAGAGATCATTTGAACGAGCGCTTCCCCAACCGGTGGATTGGTCGAGGCGGACATATTGCGTGGCCACCCCGGTCACCCGATTTAAAtccattagatttttttctttag
- Protein Sequence
- MAAARREYTQREYAEMHYLYGFCDGNARAAAREYRQRYPNRDRFPDYRVFMRVHNSYMEGVLPGQHAPRAGRPVVRFENEDEVLRELRLDPSISQRQISRNLGIPRSTVQRVINRNREVLRELRLDPSISQRQISRNLGIPRSTVQRVINRNRYHAYHVQRVQALLPSDYEPRVRFCREMLRYHREDPQFFNKVLWTDESTFRRMGVFNIHNLHFYSRVNPHIIRNDRFQHLFGINMWAGIIGQQLVLHEMPARLNGAQYLNFLQNNLNHILNEAEVPEERIAEMWLQHDGAPPHYAQAVRDHLNERFPNRWIGRGGHIAWPPRSPDLNPLDFFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -