Lole028027.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493401.1:24456016-24457129[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.16 47 5.2 0.0 27 39 85 97 85 101 0.88 2 2 6.2e-08 1.8e-05 25.8 0.1 2 30 115 143 114 144 0.94
Sequence Information
- Coding Sequence
- ATGCATTGGACAAATCGCAAAATACACCCAGGGCATCTCATTTATTTCTCTATGCATTATAAATATGTGGTAAAAGTTCGACCGTTCGAGCTGTACCGTTCGTTTGTGCCTCGAGGAAAGAGAGGATTACTGCAGAGTATTGGTTCGGTCTGTGGTCACTCCTATAATTTCTTACTTCGGAAGTATTGGCCCTACAGTGATATCAACGTGACTTTGTTCATCGCTAGCATTCATTGTATCAACGTTTTTCCAGGCATCCCCAGCAGTACACTGTACAAGATAGCTCGTCGCGAGGGCATCCGCCTATCCGCGCCATTCAACGCGGCGCCCACGTCCTGGCGGCGCGCCGACCTGCAGCTGGCGCTCGCCTCCATCCGCGCCGGCGCCAGCTCCGTGCAGCGCGCCGCCACGCAGTATGGCATACCAACAGGTATGTACTGCTGTACCTCTGAATGTTGGTCAACGCGGCGCCCACGTCCTGGCGGCGCGCCGACCTGCAGCTGGCGCTCGCCTCCATCCGCGCCGGCGCCAGCTCCGTGCAGCGCGCCGCCACGCAGTATGGCATACCAACAGGTATGTACTGCTGTACCTCTGAATGTTGGTCAACGCGGCGCCCACGTCCTGGCGGCGCGCCGACCTGCAGCTGGCGCTCGCCTCCATCCGCGCCGGCGCCAGCTCCGTGCAGCGCGCCGCCACGCAGTATGGCATACCAACAGGTATGTACTGCTGTACCTCTGA
- Protein Sequence
- MHWTNRKIHPGHLIYFSMHYKYVVKVRPFELYRSFVPRGKRGLLQSIGSVCGHSYNFLLRKYWPYSDINVTLFIASIHCINVFPGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLQLALASIRAGASSVQRAATQYGIPTGMYCCTSECWSTRRPRPGGAPTCSWRSPPSAPAPAPCSAPPRSMAYQQVCTAVPLNVGQRGAHVLAARRPAAGARLHPRRRQLRAARRHAVWHTNRYVLLYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -