Lole024857.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493399.1:14658277-14658636[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.4e-11 2.2e-08 35.1 0.0 2 43 11 53 10 55 0.82
Sequence Information
- Coding Sequence
- ATGCCAAAGgtgcttaaattaaaatactctCAAGAAAACCTTCAGAAGGCAATAGCTGAAgttcaaaataatgaaaatcaatTGTCAGATCGCCAAATTTCTCAAAAGTATGGTATCCCGAGGTCAACACTTCGCTTTTACAAACGTAACCCGGGCCATAAAACCAGTCTGGGCCCATCGCCAATTTTGACTCCAAGCGAAGAATCGATTATTGAAGATTGGTTAATTACATCTGCTCGAAAAGGTTTTCCCAAAAACAAAGACAATGTGTTAGACAGCATACAAAAATTCTTAGTCGATAACCCAAGACCAAATCCTTTTACCAATAACAGGCCTGGGAATGGTGGAAGGCTTTTTTAA
- Protein Sequence
- MPKVLKLKYSQENLQKAIAEVQNNENQLSDRQISQKYGIPRSTLRFYKRNPGHKTSLGPSPILTPSEESIIEDWLITSARKGFPKNKDNVLDSIQKFLVDNPRPNPFTNNRPGNGGRLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -