Lole018340.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493395.1:5630954-5634726[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-11 5e-09 37.2 0.0 3 36 17 50 15 58 0.90 2 2 3.4 1e+03 1.0 0.0 21 31 105 115 104 115 0.90
Sequence Information
- Coding Sequence
- ATGGTTCGCCACTACCAAAGGAAGACAGAACGTGCCAAATGGAGCTTGGAGGATATGGAAGCAGCCGTAAAAGATGTGGCTAGTGGCAGGTTAAGCTGTAAACGGGCCGCTCTTGAGTACAATGTGCCACGATCAACTTTGCAGCAAAAACTCGAGGAGTACAAATCAAAACAGCACTTATCACCAACAAAACTAGGTAGTTTGAGACCAATATTTTCAGCTGCTCAAGAGGAAGAGTTAGCTTCAAATATTAAAGACATGGAAGGTAGATTGTTTGGTTTGTCTCCAAAAGAAGTTCGTCAGCTGGCCTATCAATTGGCAACAAAACATAACATCCCACATAATTTTGATCCGACGACTCAAACCGCTGGCGAGGATTGGTCCAAGTCATATTCATCTACATTGCCTCAACTGTGTTCATCGGATGAAGAGTCAGAGATCGAGACGCAGTCAGTGCAGCAGAAatcgacttcttcttcttcttcttcgaatCGACTCAAAAAATCGACTACTAACAAGCGGTTCAAAACCGATCGAGTCGATGGGTCTAAGACGCACGGACCCAAGAAACCTAAAATACAACCGGTGCCGTTAACCAGCAACAAGCTGACTGCACGGGATCTATTCGGTAGTGAGAGCGATGAAGAGGATTCGTCTGCGAAGCCGTCCACATCGACTGGTAAAAAACCGACTCCTCTTTATTCTTATTTCACTAAGAGGATTAGCAAAGGCTATGCCAGAAAAATAAGTGAGACAAAGCAGGGGCCTTATTACGTAGAGGTAAAGGTGTATAATTGTGATGAAATCACAGACGTACCACCAGTAAATAGATGGCGCCATTCAATAGTTACTATCAAAACAAAAGTTGATGCGGACACGGAGATGTGGCGCCATCTAAAAGGATTTACGTCTTCAGTTGAACAAGATTTTAGTAATTGTCCAGCTACCCTtataaattcttattattaG
- Protein Sequence
- MVRHYQRKTERAKWSLEDMEAAVKDVASGRLSCKRAALEYNVPRSTLQQKLEEYKSKQHLSPTKLGSLRPIFSAAQEEELASNIKDMEGRLFGLSPKEVRQLAYQLATKHNIPHNFDPTTQTAGEDWSKSYSSTLPQLCSSDEESEIETQSVQQKSTSSSSSSNRLKKSTTNKRFKTDRVDGSKTHGPKKPKIQPVPLTSNKLTARDLFGSESDEEDSSAKPSTSTGKKPTPLYSYFTKRISKGYARKISETKQGPYYVEVKVYNCDEITDVPPVNRWRHSIVTIKTKVDADTEMWRHLKGFTSSVEQDFSNCPATLINSYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -