Lole028039.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493401.1:24465465-24466936[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0039 1.2 10.4 0.0 29 45 16 33 13 33 0.95 2 2 2.5e-18 7.4e-16 59.0 0.0 1 42 40 82 40 84 0.95
Sequence Information
- Coding Sequence
- ATGTCCGAACACGTAAGCCGCGTGTCTTTCCCCTTGTACCCCTCCCCGCACGGAACGCTGTACGGGAGGTGTAAGCGAGAGGGCATTGAGCTGTCTCGCTCCAACCCCACGCCGTGGTCCGAAGACGCAATGGGCGAAGCGCTTGAAGCTGTCAGAGTGGGGCAGATGTCCATCAACCAGGCGGCGATCCACTACAATCTGCCGTACTCCTCTCTCTACGGGAGATTCAAGAGGTGCAAGTATCAGATGCAGGGTGTCCCACCAAATCAGCAGCAACCACAGCCAGATCTCCATAAAATTGAGCATGAGCAGCTGCCACACGACGTGCAGCAGTACTACCACCAGCTTCCTGCCCCGCAGGAGCCGGAGCCGCACACGTACGCACACATGCACGAGTATACTCACCAAGATCAGTACGCGCAGTACTACCAGGGTTTTAACAGTATAGCGACCAGCTGA
- Protein Sequence
- MSEHVSRVSFPLYPSPHGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGVPPNQQQPQPDLHKIEHEQLPHDVQQYYHQLPAPQEPEPHTYAHMHEYTHQDQYAQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -