Lmin032462.1
Basic Information
- Insect
- Labia minor
- Gene Symbol
- lola_11
- Assembly
- GCA_963082975.1
- Location
- OY720349.1:68181177-68225560[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.22 34 6.2 0.5 1 15 15 29 15 32 0.90 2 16 0.2 32 6.3 1.5 1 21 148 168 148 169 0.95 3 16 0.0036 0.57 11.8 1.5 1 21 177 197 177 198 0.95 4 16 0.0068 1.1 10.9 0.3 1 21 244 264 244 265 0.94 5 16 0.034 5.3 8.8 0.4 2 21 272 291 271 292 0.88 6 16 5 7.8e+02 1.9 0.3 1 14 443 456 443 457 0.88 7 16 0.00055 0.086 14.4 4.1 1 21 468 488 468 489 0.96 8 16 0.47 73 5.2 0.7 1 16 497 512 497 513 0.86 9 16 0.064 10 7.9 1.0 1 21 514 534 514 535 0.91 10 16 0.0086 1.4 10.6 3.1 1 23 543 566 543 566 0.95 11 16 0.00044 0.069 14.7 1.0 1 21 611 631 611 632 0.96 12 16 1.8e-05 0.0029 19.0 0.2 1 23 640 663 640 663 0.97 13 16 0.52 82 5.0 0.4 1 20 693 712 693 714 0.90 14 16 1.8 2.8e+02 3.3 3.0 1 21 784 804 784 805 0.91 15 16 0.00067 0.11 14.1 0.7 1 21 860 880 860 881 0.95 16 16 0.014 2.2 10.0 3.5 1 23 889 912 889 912 0.97
Sequence Information
- Coding Sequence
- atgaCGAAACATTATCGCTATGAATGTGGTGTCGATCCACAATTCAATTGTCCACATTGTCCATATCGAAGCAAACAAAAAGACAATGCAATTCATTCTTTGGAAGAAGTTAGTACCTCTAAAAGAAGACGTTGTTGTTCATGCTACAAAAAATTATCCGAACAACATAATAGTAAATATGCAACTGCTAAAGCAACCCGATCTCGATGGAAATGTCTTCAATGTGACAGATTTTATTGTATTCCTTGTTTTACTTTTACTCATAATTCTCGTTATTCTTGGAATATGGATCCACTTCTCAACCGCTCTCAAAATTTTGATAGGATGATATCGGATTCGTATGTTGAAGCACCATTTAAACATTTACAAACGATTGATATTTCAACAATTATTCAAAATCCAACAGCAGCAATTGAACGCCCAGAAGCAGCAATTAAACGTTTTCGTTGTTTTCGTTGTGgtcgtttatataaatataaacgtgGACTCGACCTACATTTAAAATACGAATGCAATGTGGAACCTCAATTTCATTGCAAATATTGTCCATATCGGGCAAAAAGAAAATTTGGACTTGAATCTCATATGcaaATGTCATCGCTTCTTGATATGCCAAAAAGCAAGGAGATAAAACAAGAGATGTTAGTTGAAGACGAAGATGGTGATATGGAGGATATGGAACTTTTTGAATTCGATGACGACGATGATGATCCATTAGATTTAATGCAACATATTTGTCCTCGATGTACCCGTGTCTTTAATGAACGTCAAGAATTATATGAACATTTACGTGAATGTTGTAATACTCATATTAGCTGTCCTAATTGTAACAAAACGTTTCATCGATTGGCTATCTTCCAAAATCATTTGAATGAATGCAAAATCAAAGATGACTATCTTGCTGCGTCAACATATAAAAATGAgactgatgatgatgatgatgatggtgatgGTGATGATGGTAATAATGAAATGGTAATGAAAAAGGAAATCGACAAGGATGACGATTAtgtagatgatgatgatgactcTAATGATTCTTATGTAAAGCATAAGAAATATGTATGTCGGCGCTTCCCAAAAATCGAGCCGAGAAGAAGACCAGCGATTTTAAAGCGAACTACTACATCACGACGAACATTACGAAATACAAAACGACAAAAAGTCGTTCAACCGCCCCCAAGCACCGTTTCAACTGAGTCTGCTCATATTCGTCATTATTGTAAAGGACATCCGCCGGATTGTCCACGTTGCTCTCATCCGGAAAATTCAAAAGAACATCTACTAGCGTGTCGATCGAAAGAAACACCAAACTCGACTAAACCTTTTGTTTGTCTTTCTTGCAAtcgtaaatataaaaATTTGGATTCGTGTGCTACGAATGCGTATCCATGCGGGGTGCATAAATGTTTCAATTGTAACAAACGTTATTCTCATCGAGGTTCTCTTGTACGCCACTTACGTTACGAATGTGGCGTTGAACGTCAATTTCCATGTCCCTATTGTGATCATCGTAGTAAACGATTTAACGActtaaatTTTACCTGCGCGCGTTGTGGTAAATCTTACGCCAATGAACATCGGAAGATTCGCCATGAGCGATATGTGTGCGGTCAAGCAAAGCGATTCGCCTGTCCTCATTGCGAATATCGTTCGAAACAGAGTATTCACCTTCGATATCATGTCTCCCGAGTCCATTGGGATAAACCACCGTTGCCAAAAAGCCTCTTTATTCATCTGATCCATGATCGAACTCCGAGTTCAAACACAACATCCCTCGATCAACATCTCTTCAATGGGAAATGTTATAAATACCCAACGCCTGGGGTTTATCCTTGCTCACGATGTGGTCGAATTTATAGACATCCTTCTAGCATGTATAAACATAGGCGTCTTGAATGTGGAGTTGAACCCCAATTTCCTTGTCCTTATTGTCCTCGAAGGTTCAAAAGACCTGCAGCAAGACGAAAACATGTTGAAACTGTTCATCGAGGCGCTGAGCCTCTTAAACCAGGTCTTGGTGTGTTCTCCCCTACGTTAGTTGTCCGAAAAAATCGTCAAGGTGCACCTGCTCCTTATTCTTGTATTCGTTGTGATAAAGCATACTTAAGTAAAACGAGCCTGAATCGACATCTGACCAACGAATGTGGCATCGAACCTCGTTTTATTTGCGCCACATGCAAACATCAGCTTTTGTCCCTTCCACCACCTCCAATTCCATCACATGGACCGCCTTCTTTAGCTGCTTTAACCGATTTGACGATATGCAATCTTTTGAAGAGTgattataataatcatcatccaATGATGGAGGATGTGGTACCCAATCCAGGAAACGAAGAGAGTTTACATGAATGTCCACGATGTGGACGTCATTATTTGTGGCGTAGCTCTTTTAATCGACATTTACGTCACGAATGTGGAAAAGAGAGACCATTTGGATGTCCACATTGTCCTTATCCACCAGAAAATTCAAGGCTGCACAATGAATGGCCACCATTTGATGATTCCTTCCTAATAGGCTCCAAGAACAATTCACAAAACATCGAGTGGACAAATGGCAATACAAGAAAACAATTTTCATGCGAAACCTGTGGCCGATCTTATAACTGGCCATCGAATTTATTTCGCCATAAACGATACGAATGTGGAAAAGAACCCGGATTTCAATGTCTCTACTGTGATGTACGAACCAAACAGAAATGTAGTATACTAAGgcatatgaaaaatattcataaaatagaattataa
- Protein Sequence
- MTKHYRYECGVDPQFNCPHCPYRSKQKDNAIHSLEEVSTSKRRRCCSCYKKLSEQHNSKYATAKATRSRWKCLQCDRFYCIPCFTFTHNSRYSWNMDPLLNRSQNFDRMISDSYVEAPFKHLQTIDISTIIQNPTAAIERPEAAIKRFRCFRCGRLYKYKRGLDLHLKYECNVEPQFHCKYCPYRAKRKFGLESHMQMSSLLDMPKSKEIKQEMLVEDEDGDMEDMELFEFDDDDDDPLDLMQHICPRCTRVFNERQELYEHLRECCNTHISCPNCNKTFHRLAIFQNHLNECKIKDDYLAASTYKNETDDDDDDGDGDDGNNEMVMKKEIDKDDDYVDDDDDSNDSYVKHKKYVCRRFPKIEPRRRPAILKRTTTSRRTLRNTKRQKVVQPPPSTVSTESAHIRHYCKGHPPDCPRCSHPENSKEHLLACRSKETPNSTKPFVCLSCNRKYKNLDSCATNAYPCGVHKCFNCNKRYSHRGSLVRHLRYECGVERQFPCPYCDHRSKRFNDLNFTCARCGKSYANEHRKIRHERYVCGQAKRFACPHCEYRSKQSIHLRYHVSRVHWDKPPLPKSLFIHLIHDRTPSSNTTSLDQHLFNGKCYKYPTPGVYPCSRCGRIYRHPSSMYKHRRLECGVEPQFPCPYCPRRFKRPAARRKHVETVHRGAEPLKPGLGVFSPTLVVRKNRQGAPAPYSCIRCDKAYLSKTSLNRHLTNECGIEPRFICATCKHQLLSLPPPPIPSHGPPSLAALTDLTICNLLKSDYNNHHPMMEDVVPNPGNEESLHECPRCGRHYLWRSSFNRHLRHECGKERPFGCPHCPYPPENSRLHNEWPPFDDSFLIGSKNNSQNIEWTNGNTRKQFSCETCGRSYNWPSNLFRHKRYECGKEPGFQCLYCDVRTKQKCSILRHMKNIHKIEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -