Lmin003719.2
Basic Information
- Insect
- Labia minor
- Gene Symbol
- -
- Assembly
- GCA_963082975.1
- Location
- OY720344.1:58058773-58064776[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.5 3.9e+02 2.9 0.7 3 23 313 333 312 333 0.94 2 11 0.003 0.47 12.1 0.2 1 23 346 369 346 369 0.97 3 11 0.47 73 5.2 1.2 1 23 537 561 537 561 0.97 4 11 0.024 3.8 9.2 1.0 1 20 569 588 569 592 0.94 5 11 4.5 7e+02 2.1 0.8 1 17 599 615 599 622 0.68 6 11 6.1e-05 0.0095 17.4 0.8 1 23 628 650 628 650 0.94 7 11 0.0025 0.39 12.3 0.7 2 23 707 729 706 729 0.92 8 11 3.7e-05 0.0059 18.1 1.8 3 23 737 757 735 757 0.96 9 11 0.00027 0.042 15.4 4.1 1 23 763 785 763 785 0.98 10 11 0.00022 0.034 15.6 3.3 1 23 791 814 791 814 0.98 11 11 0.035 5.5 8.7 0.2 1 23 823 845 823 845 0.96
Sequence Information
- Coding Sequence
- ATGAAAGCAGATGACAAGAAAGATTCTGTCGAGTGTAATAAGCCTCTCTTGAAAAGTACCAGTGTCATGCTTTCTGATGGTGGACCATCACCCCATCAATTGGGACCTGAACCCGCTTGGCATTCCGACAAAATACTCAGACATgcaTTACTCTCACTTAATTATAAAGAGACAGAGGAGGAGGAGGATAAGACTAAATTGGATCATCCGGGACATTTTCCATTACCGCCTGTATCACAATTACCCCGTCCTGGTGGTGCTAAACTTgatccaccaccaccaccatcgTCATCATCTACATCACCACCGTCACCCATTCTTGATGAAATACAATCGGTGGCATTGGCCGCCGCAGCTGCCGCAGCTGCTGTCTCTGTTATTGGTGGAAAACAATCAACAAGAACAAAACCTGAAccaaaagaacaaaataatagTAACACTCCCTCACCACttgttgaatatttaaaagttacACCAGATGAATTAAAACTATGtttaaatgataaaacaatTGTATTGGATGAAGAAGTGAAAACGGATCTGTTACCATTTGAAACGAAATCAGTGCAAGTGGTAGAAGAAGAAGTGGGAGAGGATAGTGATGAGAGGGAGGTGGTCGTGGGTGGACAAGTGGTAACAAATAATGATGGAGAATTCACTCATGCGGAGATTCTTTCTCAATTAAGTTCGTCACGAATATTACCAGCAATCAGTTCAAGTCAAGTATGCTCAGTGCTAAGTGCATTGGATGTTGCTGATAGTCTTCCAACTCCACCACCGCCACCAACACCACCTCCACCACCACCCCAATCACAACTTCCACTCTCATCAACAACTGAATTATTGCCACCACCACCACCTACACCCACATCATCATCTCTTACTCTCAATGAGATTACTAGAAAACGAAAAATTACCCACCAGCATATTCTTCTTTGTGATCTTTGTCCTTTTTTTACACTTACAAAAGAGAATCTTGATAAACATACAAAAGAACATGCAAAAGAGAGTGGAATTGAAACATCATTTGCAAAATTTAAATGTCCAGGCTGTCcgaatgaatttttttccttaGAAGCATTCcagatTCATTTATCTAAAGATCATCTGGTAtatgataatgaaataattatattattagaagaGGCTAATGATGAAATTGAAAGGTTAAACTCGTCTACTACGCCAGCAAAGATACgagtaagaaatttaaaagCCGAATCATTAAATCTTGGACCAACATTAACGAATATTAATGAATCATTAATAACATCATCTACAACGGTAACAAATGATACTCTATCACTggaacatcatcatcatcaccaacaacaacaacaacaacatcatctTCATCATCATTCAACCTCAATGACTCCCGATTTGACAACATTAGAAcagatgaagCCATTACCTCCTGACATTCAACCTGAACAACAAAAACCTAGTATAACAACACCATCATCATCTTCAACAATTATAACAGAAACAACAACATCGACAACACGCAGTGGTCGACCAAAAGGATCCCGTAATCAAGGACATTTATTTGCCACATCATCATCAACCAATGGAGTAACAAAAAACAATTCCAATGATCATCAAACATACAAaTGTAATATTAAAGGTTGTGCAGTACGTTTAAAatctattgataatttaaattatcatcattCATCACATAATGATGGTGATCCAAGTTCATTTCGATGCCTTGATTGTActtttcaaacaaataaatggTCCAATTTAACAATTCACCTTTGGCGTTATCATATGATTGATATGGAATTATATGCATGTACTCAATGTGATTATAAAAGTAACAGtttcTATAAATTAGTGAGTATTCATCAACGAATTCATAGTAGTGAACGACCATTTGCATGTGATGTATGCGATAAGGCATTTAAAAATCGAAAGCAGATGCGCAATCATAAAGTGATACATACAACTAAAGATCgtacaaacattaaaaataataacaacaataataataataataataacaataacaataatataaatggaaTGATGTCAACTGTTAGTGGAAATCGAGGTACTTCATCATCTAATTCTggttcaacaacaacaacaacagcaacagGAACTGAGggaaaatgtaatatttgtaGTCGAACCTTTTCTACATTACGTGTATTACGTTTACATAAAGAAAATGTCCATGGTAAAGCACGGCCACATTTATGTAACTATTGTGGTTACGCGGCTAGTAGTAAAAGTTCATTGAAAATGCATATGCGTCAACATACCGGAGAGAAACCATTTAAATGTGAAGAATGCAATTATATGACATCGGATCATAATTCATTACGTCGTCATCGAATGCGTCATACAGGTGATAAACCATATAAATGTGCATATTGTAATTATGCTTGTATCCAATCGAGCACATATAAAGCGCATTTACGTTCGAAACATCCGGGATTGGAGGATGGTCTCATGTTTAGTTGCTCCTCCTGTCCTTTTCGTACTATCAAACAAGCCAATTACCTTGCGCATATGGCAGAGCATGAAGAGATACCAACAGAGATAGAAGAGGATCCCAATATAACTGCTTCAATCGTCGCTGCCAATCCAGCTACAACTGTTGTTAGTAATGATATTAATACAATACTACCTGCTGGAGACCCACTCTGTACTGTAACGCCTGTCAGTATTGTTCCTCCACTTGAATCACCTCATCATCAACAAAAGCTCGATAAACTCACCCCAACTCTCGCATTAACAAAATCAGTAAAATCCCCACCATTGATTGGTACAACCGAtcaaacaacaacaaataacaCATTAACACGTCAGccagtaattattaatattcaaccaTCAACATCGAATTCATCTACTGAACCACCGAATATAGACCATACAACAACAGGTGTAAATATTGAACTTCTCTACTGTGATACAATAACAACAACTCGTGATGTTGTAACAAGACGTGTCTTGACAACTGGCACTgatcaagaaaaatatattgtggaAATTGAACCGCATGTTGTTCATCTTGTTGAACAACTATCTACTGAAGAATTACCAAACGATTTTAATACAGTCAATgtgaTGTCTTATACAGGATTTCAAAGTGAAACAATTACTGGTGATTTACAAGAAACATCAACAAATAATCCTGAACCAATTGAACTTAAATTTAAAGAGGTTACTAaagatacttaa
- Protein Sequence
- MKADDKKDSVECNKPLLKSTSVMLSDGGPSPHQLGPEPAWHSDKILRHALLSLNYKETEEEEDKTKLDHPGHFPLPPVSQLPRPGGAKLDPPPPPSSSSTSPPSPILDEIQSVALAAAAAAAAVSVIGGKQSTRTKPEPKEQNNSNTPSPLVEYLKVTPDELKLCLNDKTIVLDEEVKTDLLPFETKSVQVVEEEVGEDSDEREVVVGGQVVTNNDGEFTHAEILSQLSSSRILPAISSSQVCSVLSALDVADSLPTPPPPPTPPPPPPQSQLPLSSTTELLPPPPPTPTSSSLTLNEITRKRKITHQHILLCDLCPFFTLTKENLDKHTKEHAKESGIETSFAKFKCPGCPNEFFSLEAFQIHLSKDHLVYDNEIIILLEEANDEIERLNSSTTPAKIRVRNLKAESLNLGPTLTNINESLITSSTTVTNDTLSLEHHHHHQQQQQQHHLHHHSTSMTPDLTTLEQMKPLPPDIQPEQQKPSITTPSSSSTIITETTTSTTRSGRPKGSRNQGHLFATSSSTNGVTKNNSNDHQTYKCNIKGCAVRLKSIDNLNYHHSSHNDGDPSSFRCLDCTFQTNKWSNLTIHLWRYHMIDMELYACTQCDYKSNSFYKLVSIHQRIHSSERPFACDVCDKAFKNRKQMRNHKVIHTTKDRTNIKNNNNNNNNNNNNNNNINGMMSTVSGNRGTSSSNSGSTTTTTATGTEGKCNICSRTFSTLRVLRLHKENVHGKARPHLCNYCGYAASSKSSLKMHMRQHTGEKPFKCEECNYMTSDHNSLRRHRMRHTGDKPYKCAYCNYACIQSSTYKAHLRSKHPGLEDGLMFSCSSCPFRTIKQANYLAHMAEHEEIPTEIEEDPNITASIVAANPATTVVSNDINTILPAGDPLCTVTPVSIVPPLESPHHQQKLDKLTPTLALTKSVKSPPLIGTTDQTTTNNTLTRQPVIINIQPSTSNSSTEPPNIDHTTTGVNIELLYCDTITTTRDVVTRRVLTTGTDQEKYIVEIEPHVVHLVEQLSTEELPNDFNTVNVMSYTGFQSETITGDLQETSTNNPEPIELKFKEVTKDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -