Lmin032444.1
Basic Information
- Insect
- Labia minor
- Gene Symbol
- -
- Assembly
- GCA_963082975.1
- Location
- OY720349.1:68007064-68027471[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00082 0.13 13.8 5.3 1 23 47 70 47 70 0.95 2 14 5.8e-05 0.009 17.5 2.4 1 21 80 100 80 101 0.97 3 14 6.1 9.5e+02 1.7 0.1 1 12 109 120 109 124 0.84 4 14 0.012 1.9 10.2 3.4 1 23 149 172 149 172 0.96 5 14 0.00017 0.027 16.0 0.7 1 21 179 199 179 200 0.96 6 14 0.00012 0.019 16.4 2.2 1 23 208 231 208 231 0.97 7 14 0.0019 0.3 12.7 0.2 2 21 270 289 269 290 0.93 8 14 0.047 7.4 8.3 1.0 1 23 298 321 298 321 0.96 9 14 9e-06 0.0014 20.0 0.8 1 21 331 351 331 352 0.97 10 14 1.3 2.1e+02 3.7 0.7 2 20 362 380 361 380 0.89 11 14 0.00079 0.12 13.9 1.1 2 22 397 417 396 417 0.95 12 14 0.0031 0.48 12.0 3.8 1 23 425 448 425 448 0.94 13 14 1.3e-06 0.00021 22.6 1.3 1 21 458 478 458 479 0.97 14 14 0.48 75 5.1 5.7 1 23 487 510 487 510 0.94
Sequence Information
- Coding Sequence
- ATGCCTGATTTACAAGatttcaattattcaaaatGTATTAATCCTTATACTGGacaagaaaaaagtaaacgtaCTAAGGAAAAAccgtatgaatcaGACGAATTAGAATCTTTGTTGTCATCGTTAACTGTCAGACCGTATAAATGTCCTCACTGCAATTATTGTAGTAAATCCATTAGTAGTTTAAATTCCCATATCTATAATCGTCATCAACGACCGAAAGGCGCACCTGGCAAATATGAATGTCATCAATGTCAACGAACATATAATCATCAGCCGAAtctaattaatcatttacgttTTGATTGTGGTGTTGAACCAAAATTTCAATGTGCTCTATGCGACTATCGATtgaatcatttaattaataaacaacaatGTGCTGAATGCATGGAAACAATTGAACATTCGTTACTGGACCATATTCGCTTTGAATGTAAACCGTTTCGCTGTTCCAAATGTCCTTATCGTGGAAGACTGAAACGTTATCTCAAAGATCATATGAATCATATTCATCCAGAAAGTCGGACTAATTTTTCATGTGTTAAATGTAATCAAGTGTATAcgttaaaacaaaatttgaatcGACATTTGCGTTTAGAATGTGGCATAGAACCACAATTCAAATGTAATCTTTGTGATTTTCGTACAAAACGAAAAGGGAGCCTTAAAGGGCATATGCTCtcatttcattctAATGCTGTTATATTTCAAAATCGTGTAAAAAAGAGTTGTTTTAATCTGAATGTTGATTTTTATCTTGCAGATCCTGAAtggaatttttcatttaaagaagaagaaaaaattcaatGTCCCCAGTGtttgaaaatctataaaaatcgaGCATCCCTATTAGCACATTTACATAAAGATTGTGGTAAAGCTAGAGAATATCAATGTACTGAATGTATATATAAGGCAAGAAGGAAGGCACATTTAGatgttcatatattatatatgcatcGGATGTCGAAAAAAATTCCACCGGCTTATCAATGTTTAAATTGTCAAAAGTCTTATAAAAATCCCAAAAGTTTAGAAAATCATATCCGATATTGTGGAAATCAATCGGAACCGCCAATTCAATGTCCCTATTGTTCATTTTCATCTCATCGAGACACATCAATGAGATCTCATTTATGGcaTTCAGATGAACCATGGCCAGCACGATTTGAAGTTGAAAAAACGCAGTGTCACCAAtgtttaaaaatctataaaaatcgtGCTTCGCTCTCCGCTCATTTACGAAAAGATTGTGGCAAAGAGAGGGTATTTGAGTGTAGTGAATGCAATTATAAAGCGAGGAGAAAAAATCATTTGCAAatgcatattttttataaacatcgCATTTCTAAAGAAGATCCACCTGCTTACGAATGTACCTATTGTCATAAGGTATATAAAAATCCGAAAAGTTTAGAAAATCATATACGGTACTATTGCGGGACTGAACCTTCATTTAAATGCACCTATTGTTCATATCGATCCCACCGCGAGATTTCTCTAAAATCTCATGTCCACTTAAGGCATAGcactaaatga
- Protein Sequence
- MPDLQDFNYSKCINPYTGQEKSKRTKEKPYESDELESLLSSLTVRPYKCPHCNYCSKSISSLNSHIYNRHQRPKGAPGKYECHQCQRTYNHQPNLINHLRFDCGVEPKFQCALCDYRLNHLINKQQCAECMETIEHSLLDHIRFECKPFRCSKCPYRGRLKRYLKDHMNHIHPESRTNFSCVKCNQVYTLKQNLNRHLRLECGIEPQFKCNLCDFRTKRKGSLKGHMLSFHSNAVIFQNRVKKSCFNLNVDFYLADPEWNFSFKEEEKIQCPQCLKIYKNRASLLAHLHKDCGKAREYQCTECIYKARRKAHLDVHILYMHRMSKKIPPAYQCLNCQKSYKNPKSLENHIRYCGNQSEPPIQCPYCSFSSHRDTSMRSHLWHSDEPWPARFEVEKTQCHQCLKIYKNRASLSAHLRKDCGKERVFECSECNYKARRKNHLQMHIFYKHRISKEDPPAYECTYCHKVYKNPKSLENHIRYYCGTEPSFKCTYCSYRSHREISLKSHVHLRHSTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -