Lmin010959.1
Basic Information
- Insect
- Labia minor
- Gene Symbol
- -
- Assembly
- GCA_963082975.1
- Location
- OY720345.1:49751308-49754148[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.9e-06 0.0011 20.4 1.5 1 23 400 422 400 422 0.98 2 14 7.9e-07 0.00012 23.3 0.4 1 23 428 450 428 450 0.98 3 14 0.0094 1.5 10.5 2.5 1 23 456 478 456 478 0.96 4 14 0.021 3.2 9.4 2.0 1 20 484 503 484 505 0.90 5 14 0.00012 0.018 16.5 0.3 3 23 515 536 513 536 0.95 6 14 0.0015 0.23 13.0 1.7 1 23 561 583 561 583 0.96 7 14 6.9e-06 0.0011 20.4 5.9 1 23 589 611 589 611 0.99 8 14 3.1e-07 4.8e-05 24.6 0.4 1 23 617 639 617 639 0.98 9 14 2.1e-05 0.0033 18.9 0.4 1 23 645 667 645 667 0.97 10 14 0.00057 0.09 14.3 0.3 3 23 675 695 674 696 0.94 11 14 9.3e-06 0.0015 20.0 0.7 2 23 717 738 716 738 0.93 12 14 0.00012 0.019 16.4 4.2 1 23 744 766 744 766 0.98 13 14 6.7e-06 0.001 20.4 1.4 1 23 772 794 772 794 0.97 14 14 0.00027 0.043 15.3 5.5 1 23 800 822 800 822 0.97
Sequence Information
- Coding Sequence
- ATGTGGTTGTTTCAGATTGATAGTAAAACGGATTTGTTGGAAACAAaagatgaattattaaaaaatgacacTCATGAAGCGTTAACTGTATTACAAACAACATTTCCGTCACAAATGCAAccgcatcatcatcatcatcatcattcattAATGcatcatcatcaccatcatcatAATCTTGCTCATTCTCATCCGACAACAATGTCTCATCACCTACATCATCATCTTCTTCCAAATACCGATACCACAACATCAAACACTACATCCCCATCAACAACATCTAACTCACCACATCATTATCAAGATTTACAACAAATGCATCATCAGCTTCAACATCATCATCACCAGCAGCATCCTGCATCAACATTAGCATTACAACAAGCAAATGATATAGCAAATGATATTCCGAATCATTCATCATCATCGACAACATCACAATTTATTCCACAAATTCAACAACTAGTGCCCCAATCTATCACTGAATTATTAATTCCGTCATCTATAGATACctctaatcatttaaatataacaccAAATAATACGAAAAATATATCAACGAAAAGTATTGCTGTAGATACAATCGATTTAGAATGTTTCACTCCCTCCCCATTGATTgaaatatcatcatcatcagcatCAACAGGTGTTCGTCCATTAACTCGTTCAATAGCAATAGATACATCCGATCTGGATAATCATTATGAGTTTTATAAGCATCCTATACCAATTATACGTAAACATGTTTATACAGATACAAATGATCTCCTACAACGAACTGAACGCCGAAATGAACAAAAAACAATAACCACACAAACATCAACAACACGTCAACAACAATCTATTGAAACAACACAATTAAAGATGGAAACCAaggacattttacataataataataataataataataataataataataataaaatatctgagtGGGATACAGATTCATTAAGTGATCGTGATAATTTCGATAAAACATTTGAAAACAATGAAGAGGATCCAGAATTTGTATGTAAAGTCAATGGAATTAACACAAATCCAATTACAATGACATTACGAAGTATTGATCATCATCAGAATAATAACGATGATGATAACCTTGATGATGATGCTAATGAAGATGGAGAAAATCAAATGTTGACAACATCGCTAACATCATCAACATCAACAAATCAATCCAATGGAAATGATGGTAAATTTCCCTGTGAAATTTGTGGTGCAAAATTTACACGTAAACATAGTATGATGATTCATTTGCGAAAGCATAATGGTGAAAAGCCATTTGAATGTGGATTATGTTCAAAAGCATTTGCCACTAAAGTGCAGTTGGTACGTCATCAAAGGActcatactggtgaaaaaccATACGAATGTGAAATTTGTTTGAAACGTTTCTGTTCAAAACAAGAAgtgaaatatcataatttaatacatGAGGGCATTAAACCACATGTATGTCCATATTGTGGACGTCAATTTCGATGGAAAGCACAAATTAAAAAGCATAAATGTGTGAAAGAGACTGAGGATGGTGGACTAATTTGTGGATCATGTGGCCAAGTAtttaatacaaaacaaaatttattacaacATGAAAAGACAATGCATAATACTACTAATACAGAAATGATTGTATCTCGTTCACAAATGCAATCACCACAACAGCCCAAAGAGAAGAAACATGAATGCTTAATATGTGGAAAACGATTCTACGCAATGAGTGCATTGAAAATTCATCACACTGTTCATACAGGAGAGAAACCATTTAAATGTGAATTATGTGGAAAATGTTTTCCAACAAAAACATGTCTTAAGGCACATACGAACACTCACACTGGAATTAAGCCCTATATATGTTCAACATGTGGAAAAGCATTTGCTAAAAACGAcagtttaaaaattcatataagaaagcatacaggagaaaaaccattcGAATGTGATGAATGTGGAATGGCATTTGATAGGAATTtcacattaaaaaatcataaattaattcatacaggagaaaagacaAACATTTGTGCCACATGTGGCAAAGCATTTGCAACACGTGGTGCATTAGGAACACATGAACGTAATCATCATTATACTGGTGAAAAACCACGAAAGCCATATAAACGTCGTGAAAAGGATTTTGAAAAGTGTATGTGCGATATTTGCGGCAAAGTTTATTCAAATCAAGGAAATTTACGCTTACATAAAGTAATACATACAGGTGAGAAAAGTTTTCAATGCAATGTCTGTGGCAAGGcatttgcaaaaaaatataCGTTACAATGTCATACACGAAAACATACAGACGAACGTCCATTTGCCTGTGATGTATGCGGACAAACATTCTATCGTAATTCCACATTGAAAACGCACAAATTACGTCACACGGGTGAAAAACCGCATGTATGTCAATTATGTGGAAAAGCGTTCACACAAAGTTGTTCATTAGCTTATCATTTACGTCATCATAATCGGCCACCAAAAGCAACGCCACCCAAAAGAAAACCCCGCAATAAACGCAACAAAATAACACCACATGAATCGAGTACAATAACAACGGCTCCAGCAGCAACTGTAACAACCACACTCTTACATCCAACACAATCATCATTGGCAATGCAACAAACATCTCCACAACAACCGGtaatgcaaaatattttgcatgaATTACAAGTACCAATACAAACAAATCAGCAAAAAATGTCACTTCCAACAACAGCAACATTACATATACATCAACCACCAAATGTGAATTCTAATACTAATGTTGCAACAACTTTTCCAACTGTCCAACTATTCAGTAATCCTGCTTATATTACAATGACAAATCTACCACAATTATAA
- Protein Sequence
- MWLFQIDSKTDLLETKDELLKNDTHEALTVLQTTFPSQMQPHHHHHHHSLMHHHHHHHNLAHSHPTTMSHHLHHHLLPNTDTTTSNTTSPSTTSNSPHHYQDLQQMHHQLQHHHHQQHPASTLALQQANDIANDIPNHSSSSTTSQFIPQIQQLVPQSITELLIPSSIDTSNHLNITPNNTKNISTKSIAVDTIDLECFTPSPLIEISSSSASTGVRPLTRSIAIDTSDLDNHYEFYKHPIPIIRKHVYTDTNDLLQRTERRNEQKTITTQTSTTRQQQSIETTQLKMETKDILHNNNNNNNNNNNNKISEWDTDSLSDRDNFDKTFENNEEDPEFVCKVNGINTNPITMTLRSIDHHQNNNDDDNLDDDANEDGENQMLTTSLTSSTSTNQSNGNDGKFPCEICGAKFTRKHSMMIHLRKHNGEKPFECGLCSKAFATKVQLVRHQRTHTGEKPYECEICLKRFCSKQEVKYHNLIHEGIKPHVCPYCGRQFRWKAQIKKHKCVKETEDGGLICGSCGQVFNTKQNLLQHEKTMHNTTNTEMIVSRSQMQSPQQPKEKKHECLICGKRFYAMSALKIHHTVHTGEKPFKCELCGKCFPTKTCLKAHTNTHTGIKPYICSTCGKAFAKNDSLKIHIRKHTGEKPFECDECGMAFDRNFTLKNHKLIHTGEKTNICATCGKAFATRGALGTHERNHHYTGEKPRKPYKRREKDFEKCMCDICGKVYSNQGNLRLHKVIHTGEKSFQCNVCGKAFAKKYTLQCHTRKHTDERPFACDVCGQTFYRNSTLKTHKLRHTGEKPHVCQLCGKAFTQSCSLAYHLRHHNRPPKATPPKRKPRNKRNKITPHESSTITTAPAATVTTTLLHPTQSSLAMQQTSPQQPVMQNILHELQVPIQTNQQKMSLPTTATLHIHQPPNVNSNTNVATTFPTVQLFSNPAYITMTNLPQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -