Lmin030876.1
Basic Information
- Insect
- Labia minor
- Gene Symbol
- -
- Assembly
- GCA_963082975.1
- Location
- OY720349.1:39605104-39614264[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.025 4 9.2 0.5 1 23 368 390 368 390 0.95 2 12 7.1 1.1e+03 1.5 2.6 3 23 401 422 399 422 0.89 3 12 0.022 3.4 9.4 0.2 2 23 454 476 453 476 0.79 4 12 6.3e-05 0.0099 17.3 0.2 2 23 483 504 482 504 0.96 5 12 0.014 2.2 10.0 1.5 1 23 552 576 552 576 0.98 6 12 1.7e-06 0.00027 22.2 1.3 1 23 592 614 592 614 0.98 7 12 6.2e-06 0.00098 20.5 3.2 1 23 620 642 620 642 0.99 8 12 6.5e-06 0.001 20.4 0.8 3 23 650 670 648 670 0.97 9 12 0.014 2.2 10.0 0.5 1 23 676 698 676 698 0.97 10 12 5.1e-05 0.008 17.6 2.6 1 20 704 723 704 726 0.94 11 12 3.9e-08 6.2e-06 27.4 0.2 1 23 732 754 732 754 0.98 12 12 5.4e-05 0.0085 17.5 3.9 1 23 760 782 760 782 0.95
Sequence Information
- Coding Sequence
- atgaaatttattttatcgaaaatgaaCAACGAGAGTGTATTAATTAATGTCGAAACGAATGAGATTGTGAAACCATTAAAGAGGCGGATTCAAGAAGAGCAAGAGCTACAATTGTTGGAATTATCTCATATGCAAAATGGAAACATTAATCACGACCAAGCGGTTACCTCATTTTCAGATGATGATCCTTCTAAATCgttcaatgaaatatattatcaaaaatgtgCGGTGGTAAATTGTTATAATTCGAAAAAACAACCAAatggaaaaacattttttaatttcccgaATAATGTGGAAAGATGTCAACATTGGTTAATTTTAACGAAACttAATCCTAAAGAAGAGATATTGGAGAAATTCCCAAACAATGAACTTTTGGATCGGTTTCCTTATTTATTATGCCGCCTTTGTGCAAAGCCTACATTTGATCCGGCATTTATCTATAATCCAATGGAAAAGGATAATCATCTCGCGGACAAGATCAACACTTGCCTACCGATaacagTACGTGATACAGATCCTTTGCCAAAACAAATATGTCCATCGTGTATTGTGAAATTAGATGTCTGCTATGAATTTTCAGAATCTTGTGTTCAGGCCGAAAATACTTTACGTTCATTgcataaaagaaaacatttcaaGTCTCAATTTCAAGATTCGGGACTGGTACCACTCTCCCTGATGCCGCTTCACCCGGAAGAACAACAACCATCTATTCCACGGGAGACGAATTTTCAGCAGCCCATGCAAATGACGTCTTCAAGTCCGATGAGTCCACCGTGTTTTTGTTGTCCACTTTGTTATCAGGGTACGATGATCATGCACAGcaataaattagaaatgaatCATGCAACTAGTATCATGAACAACgcgaataatttaaatgaaaattcctCTATGTTAAATCGTTCGAGTGAGTATCCTCTTAAAATTGCTAATTTTAGTTCAACATCAACATTATTAGAAAATCATGAACCTAAGTTGCTAGATGTCAAATTTTTGAAGAAAGAACAAGTATTTTGTCGCATCTGCGctaaagaatttgaaaatttggaTTTCTGTTTGAGCCACGCCAAGGAGCATAACGACAAAGATATGTTTCCATgttcaatttgttatttaagTTTTAGTTCCGAGTTTTATCAAGATAATCATATGGAAGAGCATAAGAAtttacaaatgaataatttaattcattgcaACGCCTGCGGATTGgacttttataatgaaaaatcgattaaaGAGCATAGTTGTCAGTCACATTTTAAATCGATGCAAAGCTTTACGAATCTTTTAACTAAAACAATGATGCCTGAAAATTCCCAATATGGAACAAGAAATGAAGAAGAATTGGATCGATGTCCTTATTGTGGAAAACATTTTGTAGTTGGCAGTATCATGTTAGAGcatattaaaattgatcataTGGATGAAAAAGTGTTAGAGTGTCCAATATGCGGACTGAATTTCATGAATAAAGATCAATTTATGAATcatgaaaaaattcatttacaaGATAATTTCAATGATCAACCACAACCTTTTGAAGAAAACAAAATCGATCCGTTGTCTTTTACTATGCCAATGGAATCTCCATCAACATCCAAAAATTCCAATTTAGAATTCGATATTAAAAATCAGTCTCGCTCTTATCAATGTAAATTATGTCAAAGTTTATCGTTCGTTTCTTATTCGAAATTATTAGAACATCGTCGTAAAATACATCCAGAAATTGATTTTTCCGAGGAGGATTTACGAATATCGAAACCGTTCCGATGCGAGGAGTGTGGCAAATCTTTTGCTTATCGGGTGACATTAACGACACATAAACGTTTGCATACAGGCGAATTGCCATTTCAATGTGAGTTTTGTGAAAAGAAGTTCTCGCAAAAACGCTCGTTGGTACTCCATCGACGCACGCATACTGGAGAGAAGCCTTATGGATGTGACATTTGTGGCAAACGATTTGTCCAGAGTGCCCATCTTTATGCGCATAAACGGCTTCATACTGGGGAAAAGCCATACAGTTGTTCTATTTGTGATGCCAAATTTCGTTTAAAAGATGTTCGTGACGCCCATTTACGAAAACATACTGGTGAGCGCCCTTTTAAGTGTAATGTATGCGATAAGGCTTTTCGAACCAGTCATTCATACTATCAACATATGTGGATTCATCAGGGTAAGAAGCCCTATCCATGTGAATATTGTGGCAAAGCTTTTCGCCGTTCTAATGGTTTGAAAATTCATATacgaattcatacaggagaaaagccgcATGCATGTGATATTTGTGGCAGATGCTTTGCACAAAAACAAGACATGAAGAAACATCGAAATCTTCATCTGGCaggcaaattataa
- Protein Sequence
- MKFILSKMNNESVLINVETNEIVKPLKRRIQEEQELQLLELSHMQNGNINHDQAVTSFSDDDPSKSFNEIYYQKCAVVNCYNSKKQPNGKTFFNFPNNVERCQHWLILTKLNPKEEILEKFPNNELLDRFPYLLCRLCAKPTFDPAFIYNPMEKDNHLADKINTCLPITVRDTDPLPKQICPSCIVKLDVCYEFSESCVQAENTLRSLHKRKHFKSQFQDSGLVPLSLMPLHPEEQQPSIPRETNFQQPMQMTSSSPMSPPCFCCPLCYQGTMIMHSNKLEMNHATSIMNNANNLNENSSMLNRSSEYPLKIANFSSTSTLLENHEPKLLDVKFLKKEQVFCRICAKEFENLDFCLSHAKEHNDKDMFPCSICYLSFSSEFYQDNHMEEHKNLQMNNLIHCNACGLDFYNEKSIKEHSCQSHFKSMQSFTNLLTKTMMPENSQYGTRNEEELDRCPYCGKHFVVGSIMLEHIKIDHMDEKVLECPICGLNFMNKDQFMNHEKIHLQDNFNDQPQPFEENKIDPLSFTMPMESPSTSKNSNLEFDIKNQSRSYQCKLCQSLSFVSYSKLLEHRRKIHPEIDFSEEDLRISKPFRCEECGKSFAYRVTLTTHKRLHTGELPFQCEFCEKKFSQKRSLVLHRRTHTGEKPYGCDICGKRFVQSAHLYAHKRLHTGEKPYSCSICDAKFRLKDVRDAHLRKHTGERPFKCNVCDKAFRTSHSYYQHMWIHQGKKPYPCEYCGKAFRRSNGLKIHIRIHTGEKPHACDICGRCFAQKQDMKKHRNLHLAGKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -