Lmin018492.1
Basic Information
- Insect
- Labia minor
- Gene Symbol
- L_1
- Assembly
- GCA_963082975.1
- Location
- OY720346.1:83771848-83796304[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.9e-06 0.00045 21.6 1.0 1 23 82 104 82 104 0.98 2 20 0.24 38 6.0 5.9 1 23 110 132 110 132 0.98 3 20 1.8e-06 0.00029 22.2 1.4 1 23 138 160 138 160 0.99 4 20 1.6e-05 0.0026 19.2 0.3 1 23 166 188 166 188 0.99 5 20 0.00085 0.13 13.8 0.1 1 23 214 237 214 237 0.97 6 20 0.031 4.9 8.9 3.4 1 19 447 465 447 470 0.91 7 20 0.51 80 5.0 0.2 3 23 554 574 553 574 0.98 8 20 0.066 10 7.8 0.3 3 23 625 646 623 646 0.92 9 20 6.9 1.1e+03 1.5 0.3 1 23 651 674 651 674 0.87 10 20 4.5 7e+02 2.1 0.2 10 23 698 712 697 712 0.90 11 20 1.4 2.2e+02 3.7 1.8 1 23 736 758 736 758 0.94 12 20 0.0084 1.3 10.7 5.6 1 23 762 784 762 785 0.96 13 20 3.7e-05 0.0058 18.1 1.3 2 23 900 921 899 921 0.97 14 20 0.58 92 4.9 0.5 1 23 952 974 952 974 0.94 15 20 0.36 57 5.5 2.1 3 23 983 1003 982 1003 0.98 16 20 0.0043 0.68 11.6 2.4 1 23 1124 1147 1124 1147 0.94 17 20 0.031 4.9 8.9 1.0 2 23 1171 1192 1171 1192 0.95 18 20 0.0026 0.41 12.3 0.6 1 20 1200 1219 1200 1222 0.95 19 20 0.029 4.5 9.0 0.3 1 23 1229 1251 1229 1251 0.95 20 20 4.5e-06 0.00071 21.0 0.2 2 23 1312 1333 1311 1333 0.96
Sequence Information
- Coding Sequence
- ATGCTCTTCAAAGGGAACTCGTCGCGATTGGAACTTCTCATCGAGAAGATTCAAGCTAATAAAGAAAATCATGAAGCTGAACATCCACTCAAAGctcTTGGTACGGAGGCGGGTTCATCGTGGCGGTCCGACACCCCCGAGGATTTATCCCGTTCACCCTCTTCATGTGCCACACCCAATTCGGCAAGTGAACTCCCCGAGGCGGAGCTTGCTTTCACCCATGGGGTAACCGAAGCCACACCTTACCCTTGCCAATTTTGTGACAAAGCATTTCCAAGGCTTAGTTATCTCAAAAAACATGAACAGacgCATAGTGATCAGATGCCATTCCGATGTGAGTTCTGCTCCCGGCTATTCAAACATAAACGTTCCCGTGACAGGCATATTAAATTGCACACAGGTGATAAGAAATATCGATGCGCTAATTGTGAGGCTGCATTCTCCAGAAGtgatcatttaaaaattcatatgaaAACGCATGACACACAGAAGCCATTTCAATGTACAATTTGTACACGAGGTTATAATACAGCTGCCGCTCTTACATCTCATATGCAAAGTCATAAAAGGGCTGCAAGTGGAGTAGATGGCAATTCAGGGGGACCAACAGGCATTAATCCTTTCCCCGATGGTATTGGTTATCGATGCCTTCAATGTGGCGACGCCTTTAAATTACCAGAACAATTacagAATCATATGGCTTCTGTGCATGTAAATGATTCGCCACCCCCGCCTGGTGCTTGTTCACCGCCACAATCAGCGTCTTCTGCAGCGGCTgcagctgctgctgctgctgctgcaatTGGTCTATTACAAGCTGCTGCATCATCCCGTCCGGGACTTTCCTCACATAATCATTTGACAACTTCACTCcatcatcatcaccatcatTTACATCTTTCATCATCTTCTGCCGCTGCTTCTACCAACAGTATTACTACACTGAGTAATAGTTTAGCATCGGTTGGTGCAGCTCAACAACCACTACCATCCCATTCTCATcccccaccaccaccaccaccaccaccaccaccacacaCCATCTCCCAACAATTACATCATCTTCCAGCATCAGCCAAACTTGCATGTATCTACTGCACCAAAGATACATTCACAACAATGGAACAGCTGCAGCTACACGTTCAGGCAATGcacggatCTATTGTGAATGGTGAATTGAGAGAGTATTCGCCACCATCACCagtaccaccaccaccaccaccaccaccacaacCACTACCACCACCATCAGCAACAGCAGCAGCAACAGCAACAGCAACAGCAACGTCATTACATTCCCAAGCACAATCATCCATTTCCGATACAGTTCTAAGTAATTATTCATGTGATTTATGTACAATGCGTTTCGCATCCGCCCACGCATTACGTAAACATTGTAATCAACAACATGCAACAGAAATTACAACTGGTGGATCACACTCAATGTCATCATCAGCGACCGGTGGTCCATCATCAGCAGCACCTTTATGTTGTGCTCCATGTGCCCTACCATTTGCAACAACTGCCCAATTTGCTGAACATTATCTTTTGGTGCATGCAGCAGCAGCGGTAGCCGCTGCCGTTGAACAATTGGGTCCGACAGATTTAAGTAAACCGAAACGTGCCCGCCTCGATTATCCGCCTCAGGGTCCGTTATTATGCAATCAATGTTCAGCTGCGTTGCCTGATTTCGAAGCATTTCGTACCcatttaaaaatgcatttgGATGGCACTGTACAATCGCCACTCAGTGGACATTCCGGCAACAACAACAATATATGCCCGCATTGTTGCATAGAATTACCATCCGATGGACGACGAGCGGAATTACATTTGGCAACACATTTTATGAGCTCTGAAACAGAATATGGATGTCAAAGTTGTCTGAAATTATTTCCAAAACAGGAAGATCTTCAAAGGCATTTACTTGATTTGCATGCCCATCATTTATATCGTTGCACACTTTGTAAAGATTTATTTGATAGCAAAGTAGCAATTcagGTTCATTTTGCTGTAAAACATTCCAATGAATGTAAATTATTACGATGCACAGCGTGTCCACCAGGATCAACGAGCACCCTATCATCATTATTCCGTTCCGAATTGGAACTTTGCTCTCATATCCGAACAACACACATCAATCTATTGTCACCGGCAACTACCAACACCACCAACACACCTCCAGGCCCACTCAATTTGCCTGGACATCGATGCCCATTCTGTCGGCTCTCTTGTAATTCCGAATTAGAAATGCAACTTCATTTAGCAGCACATGCAAAACATTTTCGTTGTCCAATATGTCGAGAAACTTTTCATGTAGAATTTCTATTAGATAGACATATGCATACACATCACGGAcagCCTCCAATGAATTCTGCCATCAATGGAAATGTTGTTGGCGGTTTATCACCGCAAGATTCTGGATCAGCAAAACCTTCACCGCGATTACCAACTCCCAATTCCTCTACACCTGGTTTAAATCAGAGTTTGACACCACCTGGCATTCGATgTAATGGACAAATTTCCCCTCCTGCAATTGTCAATTCTAATGATGTtacaaatgaaaatgatatGCTTTTaagaaaaacttCTTCATGTGGTGGTGTTTCATTAAATGGTTCAATTACCATTGGAAATAATTCCAATGGCAAATCATTAAAGTCGTCCTCTTCTTCTTCTACAGTGAATGTTTCATTACAATGTGCTTATTGTAGTGAGGTGTGTAAAACTCGTGCCGAATTAGAGAATCATATGAAAACGCATTCTGGCCAGGTAAACGTTTCTGCTACAAACACTACAGCAGGTGGAGTTCCAAATGTCGGTACAAGTAATAACACCATTGGAACTAACAaacataaatgtaatatttgtgATGAATTGTGTCCGAGTGCAGCTATTTTAGCTGAACATAAACTCACTCATTGCaagGTGGTTGGTGGTGCTCTCTGTACTCATTGTAAATCACCATTGACATCCGAAAATGATTACCAACAACATTTACGACAACACCAACCACAATTACCTGCGGCATGTATTGTATGTAGACAAACGTTATCCTCTGAATTGGAAGCAAGACTTCATGCTCGATTTCATTTACAgcaatcccaacaacaacaacaagatgTTTCTTCTACTGTCGTTGCGAATCGACAATGTTGCGccctttgtttaaaatcaactgAATCCCCTCTAATTCCTGCAggtGCCACTGGAGCATATCTTTGCACTGATTGTATCAGTAGAGCTTCACCACAACCGTCTGCCAATTCTCAATCAACAGGAGCACCGCCCACATCCACCTCACCAAATATGAAACCAAACCAAACGTTACAACATCTAAACACAACAACAAacacacaacaacaacaacatcgtTGTAGTGAATGTCAAgttaaatttgaaacaaaagagGCACTTGAAGTTCATCATTTACAAACCCATCGAATTAACTTTACGagTGGTAGCGGTGTTGGGGGTGGTGGAGGAGGTAGTGGTGGTGATGTCCGACCGGAATGTCGTCTCTGCGTTCGTCTTTTTCCCACACAAACACATCTCCAATCCCATTTAATTGAGCATACTTTTGCTGGATGTGGTGCCTTCACATGTTATCTCTGTTCAGCGGTATTTACAACAGCACACGGTTTACAGACACATATGCCAGAACATGGTGCTGCAAGTCGTCCTTATGATTGTCCCCGGTGCGgtgtgaaattttttttccgTGCCGAATTGGATAATCATGCATTTATGCATTTGGATACCGATGCAGTAGCATCCAATCCAACCCATCAGGTCAATTCATCTGCAACATTTCAAGAACAACAAAAGCGCAATGGTCATGGTCCATTGTCATTGGGTCGTTCATCTCGGCCTTCAAGTAGAAAGGGTTCAGCCTCTCCTGGAGTGGCCGTTGAAGGTGGAACTGGCCTATTGCCCTGTCATGAATGTGGCAAACAATTTGCATCACCACGAAGTTTAGCAGCtcatattaaaaatcataataattcatCGTTAATTAACGGAACAGAAAttcaagtaaaaCGAGAATTTAAAGAGGAGCCATTGGAAAATATTTCTGACCCCGAAACGAATATGGACAACACTCCATCAATTTTAGATGAGCATCATCCACCGGATGGTGAAGAAGACATTGATGTAACAACAGGACATTCCGATTCCAATGCAATAGTCTCCTCTTGA
- Protein Sequence
- MLFKGNSSRLELLIEKIQANKENHEAEHPLKALGTEAGSSWRSDTPEDLSRSPSSCATPNSASELPEAELAFTHGVTEATPYPCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCANCEAAFSRSDHLKIHMKTHDTQKPFQCTICTRGYNTAAALTSHMQSHKRAASGVDGNSGGPTGINPFPDGIGYRCLQCGDAFKLPEQLQNHMASVHVNDSPPPPGACSPPQSASSAAAAAAAAAAAIGLLQAAASSRPGLSSHNHLTTSLHHHHHHLHLSSSSAAASTNSITTLSNSLASVGAAQQPLPSHSHPPPPPPPPPPPHTISQQLHHLPASAKLACIYCTKDTFTTMEQLQLHVQAMHGSIVNGELREYSPPSPVPPPPPPPPQPLPPPSATAAATATATATSLHSQAQSSISDTVLSNYSCDLCTMRFASAHALRKHCNQQHATEITTGGSHSMSSSATGGPSSAAPLCCAPCALPFATTAQFAEHYLLVHAAAAVAAAVEQLGPTDLSKPKRARLDYPPQGPLLCNQCSAALPDFEAFRTHLKMHLDGTVQSPLSGHSGNNNNICPHCCIELPSDGRRAELHLATHFMSSETEYGCQSCLKLFPKQEDLQRHLLDLHAHHLYRCTLCKDLFDSKVAIQVHFAVKHSNECKLLRCTACPPGSTSTLSSLFRSELELCSHIRTTHINLLSPATTNTTNTPPGPLNLPGHRCPFCRLSCNSELEMQLHLAAHAKHFRCPICRETFHVEFLLDRHMHTHHGQPPMNSAINGNVVGGLSPQDSGSAKPSPRLPTPNSSTPGLNQSLTPPGIRCNGQISPPAIVNSNDVTNENDMLLRKTSSCGGVSLNGSITIGNNSNGKSLKSSSSSSTVNVSLQCAYCSEVCKTRAELENHMKTHSGQVNVSATNTTAGGVPNVGTSNNTIGTNKHKCNICDELCPSAAILAEHKLTHCKVVGGALCTHCKSPLTSENDYQQHLRQHQPQLPAACIVCRQTLSSELEARLHARFHLQQSQQQQQDVSSTVVANRQCCALCLKSTESPLIPAGATGAYLCTDCISRASPQPSANSQSTGAPPTSTSPNMKPNQTLQHLNTTTNTQQQQHRCSECQVKFETKEALEVHHLQTHRINFTSGSGVGGGGGGSGGDVRPECRLCVRLFPTQTHLQSHLIEHTFAGCGAFTCYLCSAVFTTAHGLQTHMPEHGAASRPYDCPRCGVKFFFRAELDNHAFMHLDTDAVASNPTHQVNSSATFQEQQKRNGHGPLSLGRSSRPSSRKGSASPGVAVEGGTGLLPCHECGKQFASPRSLAAHIKNHNNSSLINGTEIQVKREFKEEPLENISDPETNMDNTPSILDEHHPPDGEEDIDVTTGHSDSNAIVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -