Lmin006555.1
Basic Information
- Insect
- Labia minor
- Gene Symbol
- -
- Assembly
- GCA_963082975.1
- Location
- OY720344.1:95784350-95789892[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.9 7.7e+02 1.9 0.2 1 12 193 204 193 206 0.86 2 19 2 3.2e+02 3.2 2.5 1 23 294 317 294 317 0.97 3 19 0.0022 0.35 12.5 4.2 1 21 335 355 335 356 0.94 4 19 4.8 7.5e+02 2.0 2.0 3 19 360 376 358 380 0.73 5 19 3.7 5.7e+02 2.4 0.7 2 23 388 410 387 410 0.90 6 19 0.00046 0.072 14.6 2.1 2 23 416 437 415 437 0.98 7 19 0.00095 0.15 13.6 1.0 1 23 443 465 443 465 0.94 8 19 1.5e-06 0.00024 22.4 1.8 1 23 471 493 471 493 0.98 9 19 0.0039 0.61 11.7 0.2 1 20 505 524 505 526 0.92 10 19 1.7e-05 0.0026 19.1 4.5 1 23 557 579 557 579 0.98 11 19 8.3 1.3e+03 1.2 8.2 1 23 585 607 585 607 0.90 12 19 1.2e-05 0.0018 19.7 0.5 1 23 636 659 636 659 0.96 13 19 0.0053 0.83 11.3 2.0 1 23 666 691 666 691 0.95 14 19 0.0021 0.34 12.5 3.6 1 23 708 731 708 731 0.97 15 19 7.5e-06 0.0012 20.2 1.3 2 23 740 761 739 761 0.97 16 19 5.7e-06 0.0009 20.6 0.7 1 23 767 789 767 789 0.97 17 19 0.00019 0.03 15.8 1.6 1 23 795 817 795 817 0.97 18 19 2.7e-05 0.0043 18.5 0.5 1 23 823 845 823 845 0.97 19 19 7.5e-06 0.0012 20.2 0.1 1 23 851 873 851 873 0.97
Sequence Information
- Coding Sequence
- atgaattcaaattttcctTTAAATCCCGAGGGAAATACAAGTAGTGTCAATTTGTCTGAAAACACATTGAAGgcaatagaaaaacaaatacatgATCAAACTGGCTCAAtactttcattaaaaattttaccagAATTAAATTCACAAGATTTACAAAGTAATTCTCTAGAGAACCAAAATATTGagtatgataataaaattacattagaaCTGAACAAGAAAGAaacgaatttttttaaacaagaaacTGAAGATGAAACTGTACAAGAAGAATACTTTAATCCAGAAAAAATTTGTCGTTTATGCACAGGTACTGCACAACCGATGGTTTTTATATATGGTGATGAAGGAAAGGAATTTAATttggaaagtaaaataaatggaGTTATACCAAATCATgtaaatataaaaGACTATCTTCCAAAACAAATTTGTAATAGTTGTTTTAAAGAGTTGCAAACATCAAAAAGTTCTGGTGTTGCTTGGAAAGATGCTGAaTCTATTCTAAATTCACAAAATACCACTTTTACTACAAATGATAATTCTGATACAGAATCTGAaggaaatttagaaatatatcatTGTCCTCTTTGTACCGAGGGTTTCATGCATTCAATGCCAGAACCACCTCAATGTTCAATTCCAGAAAAACGAAAAAGAGGCCGACCAAAAggaattttgaagaaaaaagatatttcaaaaaaagaaataaatgaaaattataagggTCAAGATAGTGTTAAAGTTAATAGAGACGGAACCATtcagGTTTTACATGATCGACATCATGAATGTAGATTTTGTGGAGTGACTCTTTATAATGAATGGATAACAATCTTTTCACATTCACTTAAACATATTGATGAATCAGTAATGTTTTATCCATGTTGTTTGTGTTATCTTTCAAGTCAAAATAAAGAAGAACTAAATTTTCACATACGTAAAAATCATTTTGAACCTCTGGCACCTTACAAGTCAATCAAACCAGATCCTCAACTTTCATACTATTGCTCTGTATGTAATCGACATTTCAAAAGTCAAAATGAACTTTTGAATCACACCTGTAATCCAATGATCTGCAAAAAATGCAATATTACCTTCTATTCAATGCAACGCTTCGAATTTCATCaacatttacataaaaaagGCGAGatttctTTAATTTGCGAAAATTGTTCTCAAGAATTTCTTGATGAAGAAACACTTTATCATCATAATCGATTTGCAcatgaaaataaatctattaaatgtaACATCTGTGATAAAGAACTTTCATGTAATTCTGGACTTAGAAATCATATGAAAACTCATATAAATGAAAGACGTTATCCTTGCATACATTgtgataaaagatttataaatcgtCAAACTTTACGGGAACATTTAGTAGTTCATTTGGATAGCAAACCATTTCAGTGTAaagtttgtaataaaaattttgctCGACAATCAAGATTACGTTTACATATGCTCTCACATGAAATAGCATCTCAGAAAAATCCTCAACCACTTTACTCTTGTAACAAATGTGGACAgGTCTTTCCAAAACATGAACTAATAACTAATCATTGGAATGGTTTGGAATCAGGGAGCAGTAAAACTTGCATTTTACAATCGgatcttcaaaaaaataattatacttttaatattgaacaattcttatttatttatcgatgTGAATATTGTGAAAAATCTTTCAAAAAtagaacttttttaaataatcacagaaAAAATCATACTGAATTAAAACCCTTCCGATGTCATATTTGTCATGctacttttgaatcattttcTCGCTGTACCACACATAAAGTAACTCATGGATTATTTGGTCTCAAGAGTAAATCCTGTACTCAAGTTATTTTAGAGAATAATATCACGAATTTATTTACCATTCCAAGATTATTTGCATGTCCAGATTGTGATAAAGATTATCCCCATTGGTCATATCTTTCAGTTCATCGTAAAATTACTCATTGTAAAAAGTTAACAAAATTCATCTGTAAACATCCAGGTTGTACTGAAGAATTTACTAACTCATGGAGTTTATCTTATCACCGTAAAACCAAACATCCCTATAATAAAGAATTGAATTCTACTTCCTCAGAAagAAATAAACCTTATAAATGTGATATTTGTGGtcgatattatttgaatttggaaaatttaaaacatcatcTTAACATATGTCATTCTGAAGAGACAGATCATTCATTACAATGCGACGAATGTGGCAAAGTCTTCTCACACAAGacCATACTCCAAGCACACAGACGAATGCATAACGGAATTAAAGCCTTTGCTTGTACAATTTGTCCCAAACGATTTGTACACGCGACTGGGCTCAATATGCATTTAAGAATGCATAGAGGGGAAAAACCTCATGTCTGCCCTTATTGTGGAAAATCTTTTCTTCAACGTTCTGATAAAGAGGATCATGTTCGTAAACATACCGGTGAACGACCCTTTGCATGTAAAgATTGTCCAAAACGGTTTCGTACTCGAGCAATGTGGCTTGAACACACTCGAATTCATAATGACGAAAGACCTTTTCCTTGTGATATTTGTGGAGCAGCTTTCCGAAGATCATTTGCTCTGAAAAATCATCGACTTATTCATACAGGGGATCGGCCATTTGTTTATAATAATTCGCTGAATAAAACTGGATGTGTTTGTCGTCTTTGTGatcaagaatttttaaatacgaatgatttacatttacatattcATAATTATCATGAAGAcatatatttagatgaaaacCCTCTTCGCTTTGAGGATAGCAAAGTTATTGAgatcaataaaatgaaataa
- Protein Sequence
- MNSNFPLNPEGNTSSVNLSENTLKAIEKQIHDQTGSILSLKILPELNSQDLQSNSLENQNIEYDNKITLELNKKETNFFKQETEDETVQEEYFNPEKICRLCTGTAQPMVFIYGDEGKEFNLESKINGVIPNHVNIKDYLPKQICNSCFKELQTSKSSGVAWKDAESILNSQNTTFTTNDNSDTESEGNLEIYHCPLCTEGFMHSMPEPPQCSIPEKRKRGRPKGILKKKDISKKEINENYKGQDSVKVNRDGTIQVLHDRHHECRFCGVTLYNEWITIFSHSLKHIDESVMFYPCCLCYLSSQNKEELNFHIRKNHFEPLAPYKSIKPDPQLSYYCSVCNRHFKSQNELLNHTCNPMICKKCNITFYSMQRFEFHQHLHKKGEISLICENCSQEFLDEETLYHHNRFAHENKSIKCNICDKELSCNSGLRNHMKTHINERRYPCIHCDKRFINRQTLREHLVVHLDSKPFQCKVCNKNFARQSRLRLHMLSHEIASQKNPQPLYSCNKCGQVFPKHELITNHWNGLESGSSKTCILQSDLQKNNYTFNIEQFLFIYRCEYCEKSFKNRTFLNNHRKNHTELKPFRCHICHATFESFSRCTTHKVTHGLFGLKSKSCTQVILENNITNLFTIPRLFACPDCDKDYPHWSYLSVHRKITHCKKLTKFICKHPGCTEEFTNSWSLSYHRKTKHPYNKELNSTSSERNKPYKCDICGRYYLNLENLKHHLNICHSEETDHSLQCDECGKVFSHKTILQAHRRMHNGIKAFACTICPKRFVHATGLNMHLRMHRGEKPHVCPYCGKSFLQRSDKEDHVRKHTGERPFACKDCPKRFRTRAMWLEHTRIHNDERPFPCDICGAAFRRSFALKNHRLIHTGDRPFVYNNSLNKTGCVCRLCDQEFLNTNDLHLHIHNYHEDIYLDENPLRFEDSKVIEINKMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -