Lmin028810.1
Basic Information
- Insect
- Labia minor
- Gene Symbol
- -
- Assembly
- GCA_963082975.1
- Location
- OY720349.1:5583534-5587531[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.017 2.7 9.7 0.2 3 21 6 25 4 26 0.85 2 16 0.00047 0.074 14.6 0.0 2 21 32 51 31 52 0.93 3 16 0.32 50 5.7 0.5 1 12 176 187 176 196 0.87 4 16 0.0012 0.18 13.3 0.3 3 23 428 449 426 449 0.92 5 16 6.6e-05 0.01 17.3 0.6 2 23 468 489 467 489 0.97 6 16 0.002 0.31 12.6 2.2 1 23 508 530 508 530 0.98 7 16 5 7.9e+02 1.9 0.3 2 23 557 579 557 579 0.92 8 16 0.58 92 4.9 0.1 1 20 593 611 593 614 0.71 9 16 1.7e-05 0.0026 19.2 1.0 1 23 620 642 620 642 0.98 10 16 0.039 6.1 8.6 0.2 2 23 649 670 648 670 0.96 11 16 3.5e-05 0.0054 18.2 2.0 1 23 676 698 676 698 0.97 12 16 2.4e-05 0.0037 18.7 4.0 1 23 704 726 704 726 0.98 13 16 0.00024 0.037 15.5 4.1 1 23 732 754 732 754 0.99 14 16 8.7e-06 0.0014 20.0 0.5 1 23 760 782 760 782 0.98 15 16 7.5e-05 0.012 17.1 0.2 1 23 786 808 786 808 0.98 16 16 4.4e-05 0.007 17.8 0.7 1 23 818 841 818 841 0.97
Sequence Information
- Coding Sequence
- ATGGGTACATTGGTATGCCCATTATGTTGTGGGGAGTCATTTCCAAGTCaagaatcattaaaatatcacCTACTTAGTGTGACAGATAATTTATATTGTCCAGAATGTGACAAACGGTTTGACAATATACCATCACTTGCTAAACATTTAAATGGATTTTGTGGAAAAGATATTGATTCGGAAGAAGAAATTGATTCTAAGGATGATATAATTGCTACATTACAGCAAGCTGACGGAAGTCacATTGTAATCGTTCAAAATGAACATGATCAACTAGATTCTCCAAACATAGAAGAAGTTCAAGATGGGGATGCAGTTGGCGAAGCGCAAGATGCTATTAAAATGAACTATGAAATTCAGTTATTAGAACCAATGGATGAATCCACAATGCAAGAAGAAACCCAAATTCAATTAGAAGAAAATGAAgatataaaaaacaatgaaCTTTTAGATAGTGAacctatagaattaaaaattccaGAAAATGGTGatgaaatttctaatttaaacgaAAATTGTGAACAATTCAGTTGTTCAACTTGTGATATGACCTTTACTTCAGTGATGGATCATATTGAAACATATCATGATGGCCAACAAGTCATTATCGagattCCTGAAGGtgaaaataaagaaagtttAGAAGATGGTGAAGGTGATGGTGTTAAAATTGTTGCTAAATGTGATGGAGAAACTATGATGGACATTGACCCCttagaaatagaagaagaaacagcgaaaatacaaaaatatttagaatctgAAGGTTATGTAgagtttaaagataaaatacctGAAGATGAAAAAGAGAGAACTGGAAGAAATGCTGATATTATTGGAACTCTTAAACATGAACAATGTTATGACCAAAAAGGTATGCGATATGTTCGCAAAGTtgttcaaattgaaaaattttgggAAAAAGACAAAGCTTCACTCGATGCTGGAAAAATTAGTACCAAAAGAACAGACATAGcagaaaataattctttagtAAGTAAGAGTTTTAAAGGCATTAAGTATATTCCAGAGGGTTTGTTAAAACTTATTGGTGGGCCAGATGTTGCTACAGATGAAGCAAATGTAGAGCGATTATTGCTTGAACTGTTAGAAACAAATCCTTCAGCAACTGACGTAGAAGATTGTCCGCTTGAAGTTCGATATTTATTTGAAGAAGATGGAAATACTAAAATTCCAATATATGTTTGTAAATTTTGTCGTACTGAACACAGTTCCAtagcaaaatatttaaaacattcatgcaaaagtgataaaatattttgtgatgAATGTGGTGTGCCTTTTAATACAAATAGAGCACTAAAAAGTCACAAAGTTAAATTCCATTCTAATAAAAcagagaaaaaattatatattaagaaaatgcttCAAGAACCAGTAGTTTGTGAATATTGCGATACCCCATTTTATACTTTAAGATCTCTTAAAATGCATAAAAGAATGCATAATCCACCTTCCAATGATTCTTCTAGAAATATAAGAGGAAATGACCCTGTGAATTATATTTGTGCTATATGTAATACTCTTTGTAAAACAAAGCGGACGTTAATTCAACATCAAAAAATACACGAAAAGAACTTAACTGAGATTGAAAAACCTGAACTTTTAGATGAAGCAGGAATCAATCTCTTAAGTTCCAGTGTGGCGGTTTGTAAAGTTTGTGCTGATTCATTTGATACGGATGAAAAATTAGCAGAACATTGGAACGAATGTCATTCAGAAATGACAGAATCTGAATTCGGTGATCAAACTAAATTCGTTTGTCAAATATGTGGAGAAAAAGTATATCGACAACTCCAAGAAATACATATGGCTCAACATTGTACCACATTGAAATTCAATTGTGATATATGTAATAGATCTTTCAATACCCTAAAATTACTTGAGCTTCATAAGAGAATTCATCTCGAAGATAAACCTTTGACATGTGCAGTTTGCAAAGAACAGTTTCTTGATGTTGAAAGTTTAAGAAATCATATGCAAAACCATTCAAATGATCGTCCATACGCCTGTAGTTATTGTGGTCGAAGATTTACTAGGCCTCATGAAAAAGTAAAACATGAGCgtattcatacaggtgaaaaacctcaTGTTTGTTCTGTTTGTGGTATGCGATTTAGAGTAAATTATTGTCTTACCCTACATATGAGAACTCATACTGGAGTAAGACCCTACCAATGTGATCACTGTGGAAAACGTTTCCGTGCTCATAATGGTTATTCGCaacatattaaaattcattcagaTGAACGAGCTTTTAAATGCCCCTATTGtccaaaaacttttaaaactgttGTTCAACTTGCTGGTCATAAAAATAGTCATACTAAACCGTATTCATGTGCGGAATGCAATCGACCGTTTGCATCTTTATATTCAATGAGAATTCATATGGAATCTCATGGTGGCCATGGAAAAGATGCACTCAAATTCAATTGTGAGATCTGTGGTGCATCTTATGCAAGATGTTTTGCATTAAAAGATCATATGAAGTCAGTTCACGATAAGAACTACGTCCCTGCAAATAGCGACACCAGAACTAATGATCAAGAAGAAACTGAAtcagaataa
- Protein Sequence
- MGTLVCPLCCGESFPSQESLKYHLLSVTDNLYCPECDKRFDNIPSLAKHLNGFCGKDIDSEEEIDSKDDIIATLQQADGSHIVIVQNEHDQLDSPNIEEVQDGDAVGEAQDAIKMNYEIQLLEPMDESTMQEETQIQLEENEDIKNNELLDSEPIELKIPENGDEISNLNENCEQFSCSTCDMTFTSVMDHIETYHDGQQVIIEIPEGENKESLEDGEGDGVKIVAKCDGETMMDIDPLEIEEETAKIQKYLESEGYVEFKDKIPEDEKERTGRNADIIGTLKHEQCYDQKGMRYVRKVVQIEKFWEKDKASLDAGKISTKRTDIAENNSLVSKSFKGIKYIPEGLLKLIGGPDVATDEANVERLLLELLETNPSATDVEDCPLEVRYLFEEDGNTKIPIYVCKFCRTEHSSIAKYLKHSCKSDKIFCDECGVPFNTNRALKSHKVKFHSNKTEKKLYIKKMLQEPVVCEYCDTPFYTLRSLKMHKRMHNPPSNDSSRNIRGNDPVNYICAICNTLCKTKRTLIQHQKIHEKNLTEIEKPELLDEAGINLLSSSVAVCKVCADSFDTDEKLAEHWNECHSEMTESEFGDQTKFVCQICGEKVYRQLQEIHMAQHCTTLKFNCDICNRSFNTLKLLELHKRIHLEDKPLTCAVCKEQFLDVESLRNHMQNHSNDRPYACSYCGRRFTRPHEKVKHERIHTGEKPHVCSVCGMRFRVNYCLTLHMRTHTGVRPYQCDHCGKRFRAHNGYSQHIKIHSDERAFKCPYCPKTFKTVVQLAGHKNSHTKPYSCAECNRPFASLYSMRIHMESHGGHGKDALKFNCEICGASYARCFALKDHMKSVHDKNYVPANSDTRTNDQEETESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -