Lmin029316.1
Basic Information
- Insect
- Labia minor
- Gene Symbol
- Znf142_1
- Assembly
- GCA_963082975.1
- Location
- OY720349.1:16263726-16266480[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0099 1.6 10.4 0.2 1 20 72 91 72 93 0.92 2 14 0.0017 0.27 12.8 2.2 1 23 104 126 104 126 0.97 3 14 0.015 2.4 9.8 6.7 1 20 132 151 132 154 0.95 4 14 6e-07 9.4e-05 23.7 0.5 1 23 160 182 160 182 0.99 5 14 2.1e-05 0.0033 18.8 0.2 1 23 296 318 296 318 0.98 6 14 0.00083 0.13 13.8 1.9 2 23 326 348 325 348 0.94 7 14 0.00043 0.068 14.7 1.2 1 20 367 386 367 389 0.94 8 14 0.0018 0.29 12.7 0.1 1 23 394 417 394 417 0.96 9 14 4.1e-06 0.00064 21.1 0.1 1 23 423 445 423 445 0.98 10 14 0.00016 0.026 16.0 2.6 3 23 455 475 455 475 0.99 11 14 0.005 0.78 11.4 0.5 3 23 483 503 481 503 0.97 12 14 0.00011 0.018 16.6 0.2 1 23 509 532 509 532 0.96 13 14 0.0013 0.2 13.2 0.1 1 23 544 566 544 566 0.95 14 14 1.1e-05 0.0017 19.7 0.7 2 23 621 642 620 642 0.95
Sequence Information
- Coding Sequence
- atggaGTCTGAACTAAAGACTGGAATGAATGAAGATAATgaaaaatctgaaaatgaatttaaCGAATGTGAGAAAAATAACTTGAAAGAAGATTCACTTATACaaagtatttatttgaaaaatgaaatttcaagtGTTGATGAATGtCTGGCTGTAGAGGCTCTTAGTCAACTTGGTGGAATGTTTACATTCCCTCTTGTGAACAATCAAACATATTTATGCCAAACATGCAATTTAGAATTCACTGATCAAATTCAATTGGATAATCATCAATCAAATTgtccattattaattaaagaagaatGTCTTCATGTTTGTCATTATTGTAGCGAATTGTTTCAAAACAAATCTGGTTTAAgtgaacatttattaatacatcaaACTGAAAGACAACATGTTTGTCTAACATGTAAATGtacttttaaaagaaaagtcGATTTACAAAATCATATGGTATGTCATCGGGTAGACCGTCCATATAAATGCACTCAATGTGGTGCTGATTTTCAACGACCATCTAGTTTAACAAATCATATGAAAATTCATGGTTTTTATCGTAAATCTTCATCAACCTttgtaaatgataataaaaataaaaagaaaaataataatatcaatttaaagaattcaaatattcataatgatcatgaatatataaatattaaaaaagatttgaaaaatGCTGATAAAGATAAAGATGGTAATTTACAAAAAGGTGAATTAGATACTCCTGAAAATGGTTTAATCTTTATGGATAATGAAACATTTGACTTGCAAGATGCTACTCTAGTTGTAGATGGTGAAAATAAACAGGATATTGTAGAATTTAATATGGGTGTAGAGCAGGAGGTGATAATTGATGGTACAGATGATCAACGACGTCCATATACCTGTTCTAATTGTGATGCCTCCTTTGCAAGAGCGAAGGCGCTTGAAGCTCATAAAAAACTACATGATGATCCTTTGTTCATTTGGGAATGTGAATTGTGCGATCAATCTTTTAATTCTCATGAATtgttatttaaacataatagtACAAAACATCaagatacaaataaaataaaaattaaagatgagGATTTTAATAACACAGTAAAACATACTTGTTTAGAGTGTGATAAGATTTTTGCTACAAAACAAAAACTCTATCGTCATTTATGGATTCATCGGAAAAGACAATATGATTGTGAAGTGTGTGGAATGAATTTTGCGGATCAACTAACATTAGATTCTCATCGTTTAAAATTGCATCCAGCCGACTCTCAGTTTGTATGCCAAGAGTGTGGAAAATCATTTGTATCACGACAGGGTCTCTGGGAGCATGGACGAGTGCATGGCGGTGGCAATGCCGGCCTATTATGGTGTCATGAATGTAATAAAAGTTTTGCCAGTCGTCAAGGGTATTTGATTCATACCCGAACTCATACTGGTGAACGTCCATATGGATGTCGTTATTGTATGAAAGCATTTCGTGATGGAGGTACATTACGTAAACATGAAAGGATTCATACTGGTGAACGTCCACATGTATGTCCATTGTGTAATAGGGCATTTAATCAAAAAGTAGTACTAAGGGAACATGTACGTTGGGTTCATGCCgctaataaaaaaaacgatACCACACTTCCATTTGCATGTAAAATTTGTGGTGTAATATTAAGTGATCGTGAGGAATTGTGTGCACATGTTGTAAAACATAGTGATGATATGGCAGCCCATGCAAAAGCAACGAAAGGGGCTTCATCTAGTACATcaccaattattattaaaaaatcaaaaacaacgtcaacaacaacaaaaaagacaaaagatatttttaataataaaagaaattcaaaaaattcaacATCCAATCTGCTTAACTGTGATATTTGtggtaaaaactttaaatttcgTTCTCAATTATTAACTCATGtacaattacatatataa
- Protein Sequence
- MESELKTGMNEDNEKSENEFNECEKNNLKEDSLIQSIYLKNEISSVDECLAVEALSQLGGMFTFPLVNNQTYLCQTCNLEFTDQIQLDNHQSNCPLLIKEECLHVCHYCSELFQNKSGLSEHLLIHQTERQHVCLTCKCTFKRKVDLQNHMVCHRVDRPYKCTQCGADFQRPSSLTNHMKIHGFYRKSSSTFVNDNKNKKKNNNINLKNSNIHNDHEYINIKKDLKNADKDKDGNLQKGELDTPENGLIFMDNETFDLQDATLVVDGENKQDIVEFNMGVEQEVIIDGTDDQRRPYTCSNCDASFARAKALEAHKKLHDDPLFIWECELCDQSFNSHELLFKHNSTKHQDTNKIKIKDEDFNNTVKHTCLECDKIFATKQKLYRHLWIHRKRQYDCEVCGMNFADQLTLDSHRLKLHPADSQFVCQECGKSFVSRQGLWEHGRVHGGGNAGLLWCHECNKSFASRQGYLIHTRTHTGERPYGCRYCMKAFRDGGTLRKHERIHTGERPHVCPLCNRAFNQKVVLREHVRWVHAANKKNDTTLPFACKICGVILSDREELCAHVVKHSDDMAAHAKATKGASSSTSPIIIKKSKTTSTTTKKTKDIFNNKRNSKNSTSNLLNCDICGKNFKFRSQLLTHVQLHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -