Basic Information

Gene Symbol
nfxl1
Assembly
GCA_030620095.1
Location
JAUTXW010000616.1:1506040-1545208[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 3 1.5e+05 -7.5 5.6 15 19 65 69 64 69 0.81
2 17 0.15 7.5e+03 0.0 0.4 4 10 100 106 99 106 0.95
3 17 3.5e-08 0.0017 21.2 17.0 1 19 114 131 114 131 0.99
4 17 3.4e-07 0.017 18.1 13.9 1 19 167 185 161 185 0.86
5 17 0.83 4e+04 -2.3 1.9 6 10 210 214 209 214 0.90
6 17 3e-10 1.5e-05 27.8 11.7 1 19 220 238 220 238 0.99
7 17 1.8 8.8e+04 -3.4 0.5 5 10 262 267 262 269 0.75
8 17 0.00056 27 7.8 8.0 3 18 275 290 273 291 0.90
9 17 0.93 4.5e+04 -2.5 2.4 1 5 300 304 300 312 0.81
10 17 3 1.5e+05 -4.7 1.6 6 10 315 319 315 319 0.93
11 17 6.5e-05 3.2 10.8 17.1 1 18 325 342 325 343 0.94
12 17 3.8e-10 1.8e-05 27.5 14.8 1 19 352 370 352 370 0.98
13 17 0.84 4.1e+04 -2.3 0.8 5 10 398 403 398 403 0.93
14 17 0.00033 16 8.5 6.0 10 19 419 428 416 428 0.89
15 17 0.064 3.1e+03 1.2 5.5 4 12 440 448 438 448 0.89
16 17 0.27 1.3e+04 -0.8 2.1 13 19 475 481 474 481 0.83
17 17 0.00086 42 7.2 6.9 1 11 517 527 507 528 0.90

Sequence Information

Coding Sequence
ATGTCGATATGCGGGACCCCGACAGTGTTGCCACGTTGCTACGAAGAATGGCTTAAGGTATGGAGTTGTTCAAATTGCTTCGGGGCTTTCCATTTGGACTGCATTCAAAGATGGTCCAAAGACACTGTGATGCAACAAAAGCAAAGGATTGAAGTTCAAGCaactgctttaaaaaaaaagttgtattggTGCTGTCCCAAATGTCGTTCCGAATATGTCCCAGAACAATACCCAATAAAGTATGTTTGCTTTTGTGGCAAAACAGAGAACCCGAAGCATCAACCGTTTTTGGTTCCACACTCGTGTGGTGAAATTTGCAGGAAAGATCTGGTGCCTCTTTGTGGGCACAAATGTTTGCTGTTATGTCATCCaggacCTTGCCCGCCGTGTCCTGTAACAGTTAGCATGACCTGTTACTGCGGCTCCCAACAGCCCACAAACAGAAGATGCTGTAATAGAGGGTGGTCTTGTGGTAACCGTTGTGGCAAGAAATTATCTTGCGAAAAACACACATGTAATGATTCCTGCCATGTTGGGGAGTGTCAGCCATGCTCCAAAAAGAGCATACAAAAATGCATGTGTGGGTCTcaacaaaaattgagagactGTGCGTCTCCGATATGGCAGTGTGAAAAGgtTTGTGGAAAACCTTTGGACTGTGGTAATCACAAATGTGAGGAGGTTTGCCACGCGGGAGTGTGTGATTCCTGCCCTCTAGCCAGATCGCGATCTTGTCCTTGTGGTAAATCCACGTACCTTCTACCATGTACAGAAGACACTCCTACTTGTGGATCTACTTGTGATAAACTGTTGGAGTGTAGAATGCACACTTGTAATTATAAATGTCATAAGGATAAATGTGGtttatGTTTAGAAATTGTTACCAAATCCTGTAGATGTGGTCAGCATTCCAAAGAGATTCAGTGTTGTAAGCAATATTTGTGTGAAAGTAAGTGTAAGAAAATGAAGGATTGTAACAAGCATCCCTGTAACCGAAAGTGCTGTGATGGAAACTGCCCGCCCTGTGAAAAACCATGTGGAAATACCCTGCAATGTGGAAATCACAagtgtccgtctgtctgtcacaGGGGCCCCTGTTATCCATGCCAGCAAACCAAAGACGTTTTCTGCCGATGTGGGGCTACTAAAATTACGGTGCCTTGCGGTAGAAAGCATAGAGTTAAACCTCCAAGGTGCTCCAAATTGTGTTTGATTCCACCAGAATGCCACCATCAGAAACGCGACAATCACAGATGCCATTTCGGCGAATGTCCCCCTTGCAAGCAAGTCTGCAACAAGCAAAGGACGAGTTGCGATCATCCTTGTCCTGCCACGTGTCATTCGGCAGTACTCGTGAAAATAGAGGCCCAGAAGGCCAGTATGCCTTGGGAGCAGAGTGCACCGCAGGTAGAGAAGCGCAATCAACCTTGTCCCAATTGTAAAGTACCAGTGAAGGTCACTTGTCTAGGTGGTCATGAAACAGCAGATTGGCCTTGTCATATGGCAAAACCTTCCAGTTGCGGTCGACCTTGTGGAAGGTTATTGGCTTGCACTAATCACACTTGTTCAACGCCTTGCCATGCCATTCAAGCTGCTGTCGATGAGGTTCAGAAGCAATCGGTTAGCGAATCGCTTACTCAAGATGACCCCAAATCCAATAATTCCAGTAGAGACGCAAACAAGGAAGTCCCTGAATCGCTCAATATTCTAGAACAAAAACTGCAAGGCTTGCAGAATGAACTTAAGGACCTTAGAGAAACCACAAAGGAAGGTCTTCAActtcttgaaaacaaaatagaaCAAAAGCTCAGCTCGGCAAACCCGGCAGGCGAATATGCTGACGTGCATCAGCTTAGCTCAGATATTGAGAAGGAAACAAACAAAATTCCACTTTCAAAACCAATCTATAAAAATGGCGAAATTGGTAAAACAGGCAGAGTATCAAAGGGCAAGGTTAGTAACCTCATAAAAATAGCAAACCCGAATATAGGTCGGCCGCACACGGACCTAGCCTGGATCTATACGCCAATACAGAAGATAAAGGCATTTTAG
Protein Sequence
MSICGTPTVLPRCYEEWLKVWSCSNCFGAFHLDCIQRWSKDTVMQQKQRIEVQATALKKKLYWCCPKCRSEYVPEQYPIKYVCFCGKTENPKHQPFLVPHSCGEICRKDLVPLCGHKCLLLCHPGPCPPCPVTVSMTCYCGSQQPTNRRCCNRGWSCGNRCGKKLSCEKHTCNDSCHVGECQPCSKKSIQKCMCGSQQKLRDCASPIWQCEKVCGKPLDCGNHKCEEVCHAGVCDSCPLARSRSCPCGKSTYLLPCTEDTPTCGSTCDKLLECRMHTCNYKCHKDKCGLCLEIVTKSCRCGQHSKEIQCCKQYLCESKCKKMKDCNKHPCNRKCCDGNCPPCEKPCGNTLQCGNHKCPSVCHRGPCYPCQQTKDVFCRCGATKITVPCGRKHRVKPPRCSKLCLIPPECHHQKRDNHRCHFGECPPCKQVCNKQRTSCDHPCPATCHSAVLVKIEAQKASMPWEQSAPQVEKRNQPCPNCKVPVKVTCLGGHETADWPCHMAKPSSCGRPCGRLLACTNHTCSTPCHAIQAAVDEVQKQSVSESLTQDDPKSNNSSRDANKEVPESLNILEQKLQGLQNELKDLRETTKEGLQLLENKIEQKLSSANPAGEYADVHQLSSDIEKETNKIPLSKPIYKNGEIGKTGRVSKGKVSNLIKIANPNIGRPHTDLAWIYTPIQKIKAF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00849482;
90% Identity
-
80% Identity
-