Kmac085103.2
Basic Information
- Insect
- Kuschelorhynchus macadamiae
- Gene Symbol
- -
- Assembly
- GCA_030620095.1
- Location
- JAUTXW010003727.1:1007445-1021969[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.15 39 7.9 0.1 1 23 137 161 137 161 0.95 2 12 0.17 43 7.7 0.5 3 23 167 188 165 188 0.91 3 12 0.022 5.5 10.5 2.1 3 23 194 216 191 216 0.86 4 12 0.00013 0.034 17.5 2.1 2 23 219 241 218 241 0.97 5 12 8.1e-07 0.00021 24.5 0.1 1 23 251 274 251 274 0.98 6 12 1.9e-05 0.0048 20.2 1.8 1 23 279 302 279 302 0.95 7 12 0.017 4.2 10.9 0.7 1 21 345 365 345 369 0.92 8 12 0.0012 0.3 14.5 1.3 1 23 372 394 372 394 0.98 9 12 1.2e-05 0.0031 20.8 0.6 1 23 420 442 420 442 0.98 10 12 0.0002 0.051 16.9 5.0 1 23 448 470 448 470 0.99 11 12 0.00034 0.086 16.2 1.6 2 23 477 498 476 498 0.96 12 12 5.3e-05 0.013 18.8 1.7 1 23 504 526 504 526 0.98
Sequence Information
- Coding Sequence
- ATGATGAAATACCTCTATCAGAAAGATTCAAAATTAACATACACAAGAAAAAGGAAGATGCTAAAACCCCAAAGAAGACTAGTAAAAAAAGGATCGATAGTCGGgtgttttgaaaaacatttacaaTCAGTCCATTCTCTTGACTGGAACGAGGGAAGGTGTTTAAAATGTacatatgaaaatacaaaaaaggatAAATTAATAGAGCATTGTCGAGAATGTACCATAGCGGAACCTAAAGACTGTGTTGAATTTGAAGAACTTAAGACCAATTGGAATGAAGTAATGGATATTAATAGAGATGAAGATGATCCAGATTTTGAATTTGACGAACCAGATAGagatgAACTAGAAATAGAAGAACCTAGAAAAGATCAACCTAAGAGAAAAAAAGGGAGGAACAAAAAGTACAGTTGTAATATATGTGATGATGTTAGCTTTAAAGATTACGAAGATATAGAGTTACATCTGAAAGAAGATCATAGTGAGGAAACTAAATGTATTCTCTGTGATCAAGAGTTCACTAACTCTTTTAGTATTCTATATCATATGATGGTGAAACATGGAAAACTTAAATGCTGTAGACTATGCttggttagttttaaaaattctgatGAATTAAATACTCATTATAAGTCGGAAGAGCATAATACAAAGTGTACAGTTTGCGGAGAGCAGTTCAAGAACAGGAAAGCTCTATATGAGCACAGAAGAAAGAAACACTTAAATCCCCAACTAGAGAATCAAAAGTACAAATGCCCTGAGTGTCCTAAAGAATTTGCTAACCAAAATAATATAAGGAGACACATAATGGTAGCTCATAACGATCTGAGATTTTTGTGTGATACTTGTGGTCAAAGTTATACAACGAAAAGAAACCTCAAACTTCACATTCAAAAGTTCCACGAGGGTATTCAGGTGCAGAACAAGAATACGAAAAAGAACTTTTTCTGTGAGGCATGTGGCAGAGAGTTGAAGATCTTCCATAAATATGCTATTGCCATGCATAGGGCGAAACATAAAGGGCacaattttgtttgcaaaaaGTGTTACGACTCTTTCGCGACTGAAGATGAGTTTAAAAAGCACGTAAAAGACTTAGGTCATCAACTTTTTGAATGCGATAAGTGCCAGTCACAGTTTGTGAGGGAAGagaatttcaaaatacatttGAAGAACCATGACGCACCCGGttggaataaaaatatgtttgctaCGTGGGGAAAATCTGCAaaattaagaaatgaaaaagGCGAGTTTGTTTGTAGTTACTGCCCAAAGGTATTTAAAGATAAACAAAGACTGGATAATCATGTTAGAGTACATACTAATGAGAGACCATATAAATGTCATATATGTAGTAAAGGTTTCAAAACTTGGATACATAGGAAGACACATTTAAATATACATCTAGgcatTAAAAAATGGGTTTGTAAATATTGTTCAAAGGCTTTTACGAATTCTTGTACTTTAAAGGGACACGAGATGATACATACTGGCGAGCGCCCGCATCGTTGCCCAGAATGTAAAAAGGGTTTTATCACAATGTCTGCCATGAAAAAACACAGAATGGTTCACTTCAGAACAGGTGGCTCCAGCTATGGGAAAAAGAAGTCTAATTTAAAAGATGAGGACAAAACTGATAGCGAACACGAAGAAAATGGcgattatatttataaatatggcCAGATGTTTTCTGGAAGTGATGTCAGTTACGAGAGCTTTACCGAACCTCCTAAAGAACCGCCTGTTAGTTTTGTATCAATTGAAAAAGAACTGTCTTGTTAA
- Protein Sequence
- MMKYLYQKDSKLTYTRKRKMLKPQRRLVKKGSIVGCFEKHLQSVHSLDWNEGRCLKCTYENTKKDKLIEHCRECTIAEPKDCVEFEELKTNWNEVMDINRDEDDPDFEFDEPDRDELEIEEPRKDQPKRKKGRNKKYSCNICDDVSFKDYEDIELHLKEDHSEETKCILCDQEFTNSFSILYHMMVKHGKLKCCRLCLVSFKNSDELNTHYKSEEHNTKCTVCGEQFKNRKALYEHRRKKHLNPQLENQKYKCPECPKEFANQNNIRRHIMVAHNDLRFLCDTCGQSYTTKRNLKLHIQKFHEGIQVQNKNTKKNFFCEACGRELKIFHKYAIAMHRAKHKGHNFVCKKCYDSFATEDEFKKHVKDLGHQLFECDKCQSQFVREENFKIHLKNHDAPGWNKNMFATWGKSAKLRNEKGEFVCSYCPKVFKDKQRLDNHVRVHTNERPYKCHICSKGFKTWIHRKTHLNIHLGIKKWVCKYCSKAFTNSCTLKGHEMIHTGERPHRCPECKKGFITMSAMKKHRMVHFRTGGSSYGKKKSNLKDEDKTDSEHEENGDYIYKYGQMFSGSDVSYESFTEPPKEPPVSFVSIEKELSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -