Kmac093999.1
Basic Information
- Insect
- Kuschelorhynchus macadamiae
- Gene Symbol
- X-element\ORF2
- Assembly
- GCA_030620095.1
- Location
- JAUTXW010004128.1:537426-553560[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 7.1e-05 0.018 18.4 3.2 1 23 525 547 525 547 0.98 2 16 0.016 4 11.0 2.5 1 23 555 577 555 577 0.97 3 16 0.05 13 9.4 3.0 1 23 586 608 586 608 0.95 4 16 0.0012 0.29 14.5 0.7 1 23 617 639 617 639 0.97 5 16 0.00026 0.066 16.6 0.6 1 23 648 670 648 670 0.97 6 16 0.0028 0.7 13.3 0.3 1 23 679 701 679 701 0.97 7 16 0.14 36 8.0 1.7 1 23 710 732 710 732 0.96 8 16 0.0014 0.34 14.3 0.9 1 23 740 762 740 762 0.97 9 16 6.5 1.6e+03 2.7 3.9 1 23 770 792 770 792 0.93 10 16 0.00018 0.046 17.1 0.5 1 23 801 823 801 823 0.98 11 16 0.0021 0.52 13.7 0.9 1 23 832 854 832 854 0.97 12 16 0.0093 2.4 11.7 1.3 1 23 863 885 863 885 0.97 13 16 0.0041 1 12.8 0.2 1 23 894 916 894 916 0.98 14 16 0.0047 1.2 12.6 0.4 1 23 925 947 925 947 0.97 15 16 0.00031 0.078 16.3 0.2 1 23 956 978 956 978 0.97 16 16 0.11 29 8.3 5.7 2 23 987 1008 986 1008 0.96
Sequence Information
- Coding Sequence
- ATGGATGAAATCAAAGCAAATGTAATAAGTGAATGTCGAGATTTGGTCTTACAAGAAGCGAAGGATTGCAAAGAACATTTTAGTccacaaagttttaaaaatgaacCAATTTGTACGGACTCACACTGGGAATCTGAAAATCTTACCCTACAGAAGAATACTGGTAGTATTAATGAAGAATTTGATGTAGAATTTACAGAAACAAAGTCATCTTTGCCTTCATTAAATATTCAAGAGGATTTTTCAAGTACATGTAACCTGATAGATGATGCTGAAAGGAAAGTGAAAGGTTTTTCTAGTTTACGGGTTAAAGTGGATAAATTGGACCCTGTGTCGATGCCAGAATGTCATAGCGATCTGAGAAATTCAAGggagGAAGAGTCAGTAGGTTTTTCTCCGGAGACATCTGTAGCTATCAAACATGAAGATGTAACAGACAATGAATCTGATGGTTGTGATAATGGTATTGCTAGTGACTTGTCCcaacaaattacaaaaagaaaTGATCCCGCAGCTTACTTATCAAATGTGTCAGTGTCTGAGACATTTTTCTTTGCTCCTACCATGGTTAATGAAATAAGATCCATTCTTAGAGAAATCAAAAACCCAAATGCTGCGGGTTGGGATTTGGTTGAGGTGATAAACCTGTCCTTCACTCACGGAATCTTTCCGCCATGCCTAAAGAAGGCTGTGGTCATTCCAGTCTACAAGGGTGGCGATAGTCAAAGTCCATCTAATTTTCGACCCATCTCATTGTTGCCGACATTAGCAAAGATGGTGGAGAAACTTGTTAAAGTGAGAATGGTGTCATTTCTGAATAAGCACAACCTAATGAGCACTCAGCAGTTTGGTTTCCAGGCCTCTAAGAGCACAGGGGATGctatatttcaatttttggaagatcTTTATATTGGCCTAAACTCAGGAGAAATCGCCTCAGCGGTGTTCTGTGACctttcaaaagcttttgattgtgtggaTCACGAAATACCTATGtggaaattggaaaaatatggCTTTAGAGGCAAGGCACTGGAGTGGTTTCACTCATATCTAACAGATCGAGCCCAGAGTGTCTTGTTCAACAATGGTAACTCACAGGATCTAAACATTAATGCTGGAGTGCCACAGGGATCTGTGCTTGGGCCTCTACTCTTTTTAATATACCTCAATGACCTTTCTCATCTGCAGATCCATGGtgattttactatttttgctgacgataccactATTCTTTGGCGTGACTCTGATGTTACTGTTCATCAGGAAAAAATTACTAGTGACTTACATAGGATAAAAGAGTGGTGCGATGCGAATGTATTGTCTTTTAATACTTccaaaactaaaacattaaattttagagAACTTGACAAGGCAAACATTAAACCATGTATGGATAAAGTAGAGAATATTgatgttaaaaaggaagaaaaCGATGATGATGACTATTTCATTGAAACATGTTCTATAAAACAAGAGGAAATACACATTAAGAGTGATAATGAGGAGGATAGCTCTATAGAGATCACCAAACATAAACTGACacacaaattgaaaaataaaattaagctgCATAAATGTCCAGAATGTCCTTACAAATCAGCTCAAAAAAGTCACCTCAAACAGCATTTGATCACACATAAAAAACCAGATGTTGTATGGTATGAATGTCAAAAGTGTCCGTTCAAATCAGTTCACAAGAGTGCCTTAAAACAGCATTCGATCAGACATAAAAAGCCAGGTGAAATAGTGTGGTATGAATGTCCAGAGTGTACTTACAAGTCATCAAAGAAGAGTCACATTAAACAGCATTCAGTCAGACATCAAAAGCCAAATGAAGTTGTATGGTATGAATGTCCAGAGTGTCCTTACCAGTCAGTTCACAAGAGTGCCCTCAAACAGCATTCGATCAGACATCAAAAGCCAAGTGAAATTGTATGGTATGAATGTTCAGACTGTCCTTACAAATCAACAAATAAGGGTGACCTCAACCGGCATTCGATCAAACATAAAAAGCCAAatgaaattgtatggtatgaATGTCCAGAGTGTCCTTACAAATCTTCTAGTGAGAGTGTCCTCAAAAAGCATTCAATCAAACATAAAAAGCCAAATGAAGTTGTATGGTATGAATGTCCAGAGTGTCCTTACAAATCACCCTGCAAAACGAACCTCAAAAATCATTCAATCAAACATAAGCCAGATAAAATTGTATGGTTTAAGTGTCCAGAGTGTCCTTACCGATCAGCTCACAAGGGTGCCCTCAAACAGCATTCGATCAAGCATAAGCCAGATGAAATTGTATATCATGAATGTCCAAAGTGTCCTTTCAAGACACTTTACAAACATGCCCTCAAACAGCATTCGATCAGACATCAAAAGCCGAGTGAAATTGTATGGTATGAATGTTCAGACTGTTCTTACAAATCTGCAAATAAGGGTGAACTCAAACGGCATTTGATCAGACATAAAAATCCAAatgaaattgtatggtatgaATGTCCAGAGTGCCCTTACAAATGTGTTACTGAGAGTGTCCTCAAAAAGCATTCAATCAGGCATAAAAAACCAAatgaaattgtatggtatgaATGTCCAGAATGTACTTTCAAATCAGCTCACAAGAGTGCCCTCAAACTGCATTCGATCAAACATCAGAAGCCAAATGAAATTGTTTGGTATGAATGTTCAGAGTGTGCCTACAAATCTGCAAAGAAGGGTGATCTCAAGTGGCATTTGATCACACATAAAAAGCCGGATGAAATTGCATGGTATAGATGTCCAGCATGTCCTTACAAATCAGCTCGCAAGGGAAATCTCAAACTTCATTCGCTGAGACATAAAAATCCAAGTGAAATTGTGTTGTATGAATGTCCAGAGTGCCGTTACCAATCACCTAACAAGAGTGACCTCAAAAAGCATTTGATCGGGcatgaaaatgtaaaggaaatATGGTGTAAATGTTCCCAGTGCTCCTTTAGCACCAAAAAATTACGAAATTTAAGAATCCATCAGCTGAAGCATGAAAGCAGCTccagtagtagtaagatgggggggGACCCAGTCCCACCCATCTCACTCCACTTCTCTACGAAGGCGACCCATTCTTCTAGTGAAGGAGAGCATCTTACCCCAGTTGAGATGTACTAA
- Protein Sequence
- MDEIKANVISECRDLVLQEAKDCKEHFSPQSFKNEPICTDSHWESENLTLQKNTGSINEEFDVEFTETKSSLPSLNIQEDFSSTCNLIDDAERKVKGFSSLRVKVDKLDPVSMPECHSDLRNSREEESVGFSPETSVAIKHEDVTDNESDGCDNGIASDLSQQITKRNDPAAYLSNVSVSETFFFAPTMVNEIRSILREIKNPNAAGWDLVEVINLSFTHGIFPPCLKKAVVIPVYKGGDSQSPSNFRPISLLPTLAKMVEKLVKVRMVSFLNKHNLMSTQQFGFQASKSTGDAIFQFLEDLYIGLNSGEIASAVFCDLSKAFDCVDHEIPMWKLEKYGFRGKALEWFHSYLTDRAQSVLFNNGNSQDLNINAGVPQGSVLGPLLFLIYLNDLSHLQIHGDFTIFADDTTILWRDSDVTVHQEKITSDLHRIKEWCDANVLSFNTSKTKTLNFRELDKANIKPCMDKVENIDVKKEENDDDDYFIETCSIKQEEIHIKSDNEEDSSIEITKHKLTHKLKNKIKLHKCPECPYKSAQKSHLKQHLITHKKPDVVWYECQKCPFKSVHKSALKQHSIRHKKPGEIVWYECPECTYKSSKKSHIKQHSVRHQKPNEVVWYECPECPYQSVHKSALKQHSIRHQKPSEIVWYECSDCPYKSTNKGDLNRHSIKHKKPNEIVWYECPECPYKSSSESVLKKHSIKHKKPNEVVWYECPECPYKSPCKTNLKNHSIKHKPDKIVWFKCPECPYRSAHKGALKQHSIKHKPDEIVYHECPKCPFKTLYKHALKQHSIRHQKPSEIVWYECSDCSYKSANKGELKRHLIRHKNPNEIVWYECPECPYKCVTESVLKKHSIRHKKPNEIVWYECPECTFKSAHKSALKLHSIKHQKPNEIVWYECSECAYKSAKKGDLKWHLITHKKPDEIAWYRCPACPYKSARKGNLKLHSLRHKNPSEIVLYECPECRYQSPNKSDLKKHLIGHENVKEIWCKCSQCSFSTKKLRNLRIHQLKHESSSSSSKMGGDPVPPISLHFSTKATHSSSEGEHLTPVEMY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -