Kmac022868.1
Basic Information
- Insect
- Kuschelorhynchus macadamiae
- Gene Symbol
- -
- Assembly
- GCA_030620095.1
- Location
- JAUTXW010000588.1:1197333-1223190[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.023 6 10.4 0.5 1 23 222 245 222 245 0.95 2 12 0.03 7.6 10.1 4.3 1 23 251 273 251 273 0.98 3 12 3.3e-06 0.00084 22.5 1.3 1 23 279 301 279 301 0.99 4 12 5e-05 0.013 18.8 3.9 1 23 307 330 307 330 0.97 5 12 0.019 4.8 10.7 0.9 2 23 336 358 335 358 0.94 6 12 0.0036 0.91 13.0 1.1 1 23 373 395 373 395 0.97 7 12 5.3e-05 0.013 18.7 1.0 1 23 400 423 400 423 0.98 8 12 0.00027 0.068 16.5 0.6 1 23 428 451 428 451 0.96 9 12 5.8e-05 0.015 18.6 2.1 1 23 456 478 456 478 0.97 10 12 0.00028 0.071 16.5 1.4 1 23 484 507 484 507 0.98 11 12 4.4e-07 0.00011 25.3 0.7 1 23 513 535 513 535 0.99 12 12 0.0028 0.72 13.3 0.4 1 23 541 564 541 564 0.94
Sequence Information
- Coding Sequence
- atgaATAAATATGAATCTTTGCCATCTAGTTCCTTTGAATTTATTTGTCGCACTTGTTTACTCCATAAAGAGTTATTTCTCATAGACGAAGTAAGTTGGGAAGGCGTTGATTTAAAAGCGATAATTTTCAACTGGACCTGTTTAGATgcAGAAGAGTATGAATGTTTGCCGAAGCAGATGTGTAGCAACTGTATCAAACTTATGTACCAAACATATAATTTCTTATACAAATGCAAACAGTCAGAAAGGGTTTTAAAGAGAGCATTCTTAAGGGATATGGTTGAAAATAACCTAGAAGatgattcaaaattaaatttattcacatatattaaaaaagaagCAGTAAGTGATGGAGATGTACAAACCAATAATATTGATCAAAACCTAGCAGATTCTCACAAAATTGATGAATACCTTGCTGACTCTGATGATGATCgtaaaccaaatcctgaaaatATTGACAACAGTTTAGAAGAGTTTGAAACTTTATACAGTAATGGTTCAATGAGGAGTGAAAATGATTATGATGCAGATATAAATGATGAAATATCTTTTAATGAAGAAACTTCAACAGAGGATGATACAGAGACCATTTTGCATGAAATACAGAGCATTAAAACTGACATTAATAAAATGAGAACATACAATAAGGTCAGATTACAATATAAATGTATAACATGTGAAGCTATATTTGAAACTCAAGAAGAATTAAAAACACATAGAAATAATACacacaagaaattttttaaatatcattgtCAATATTGTGACAGTAAGTATCAGCATTTTGGTCAACTGGAGGAACACCTACGAATTCATACTGGAGAAAAACCTTATCGATGCGACAGATGTGGGGAAAGCTTCACTTTTAAGTCCGTCTTAAACCGACATTTGCTTACACATTTGGAAGTAAAGCCATATCATTGTCCACACTGTAATAAAGGTTTTGCACGTAAAGATACTCTCGACCAACATGAAAGGAGAAGTCACAGTAGTAAACCTCTATCATGCAATTATTGTGAAATGGAATTTGATACATCTAGGCGCCTAAAATTACACGAGAAAAATATGCATCAATCATCTCAAGAGATTCCACCATCCCTAACAGAGAAAGGGTATAAATGTGATATCTGTGGGAGAGTATTGCAGTCAGAGAAGACTTATAATCATCATGTTTTACTTCATGGTCCTAGAGATTTTAAGTGTGAAACTTGTGGAAAAGATTTTATTACAAATGAGAGACTACTTTTGCATAGAAGAATGACTCATGAAAGTACCATGTTTACATGCCATATATGTGGTAACATATACAGGCAGAAAAGTGGATTAATAGGTCATTTAGAATCCCAGCATGAATCACACCACTACTGTTGTGAAGAATGTggcaaaatatttatgtataaaggTTCTCTTCTTCAGCATAGAAGGTTACATATAGGGGATCCTAAGTATCAGTGTAAAGAATGTCTCAAGGTGTGTGTAAACAAGAGACGACTAGATGCACATATACGCACTGCTCACACTGGAGAAAAACCATATACCTGTGAAACATGTGGAAAATCTTTCTCCGAGAAAGAAAACTTGACTGGTCATCAGAAAATTCACACAAGAGAGAAATCTTTTGCTTGTAATGTTTGTGAAAGTGTCTTTTCAGATTTTAAAGGTCTTAAAAATCATATTagtaataaacataataatataatataa
- Protein Sequence
- MNKYESLPSSSFEFICRTCLLHKELFLIDEVSWEGVDLKAIIFNWTCLDAEEYECLPKQMCSNCIKLMYQTYNFLYKCKQSERVLKRAFLRDMVENNLEDDSKLNLFTYIKKEAVSDGDVQTNNIDQNLADSHKIDEYLADSDDDRKPNPENIDNSLEEFETLYSNGSMRSENDYDADINDEISFNEETSTEDDTETILHEIQSIKTDINKMRTYNKVRLQYKCITCEAIFETQEELKTHRNNTHKKFFKYHCQYCDSKYQHFGQLEEHLRIHTGEKPYRCDRCGESFTFKSVLNRHLLTHLEVKPYHCPHCNKGFARKDTLDQHERRSHSSKPLSCNYCEMEFDTSRRLKLHEKNMHQSSQEIPPSLTEKGYKCDICGRVLQSEKTYNHHVLLHGPRDFKCETCGKDFITNERLLLHRRMTHESTMFTCHICGNIYRQKSGLIGHLESQHESHHYCCEECGKIFMYKGSLLQHRRLHIGDPKYQCKECLKVCVNKRRLDAHIRTAHTGEKPYTCETCGKSFSEKENLTGHQKIHTREKSFACNVCESVFSDFKGLKNHISNKHNNII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -