Kmac098646.1
Basic Information
- Insect
- Kuschelorhynchus macadamiae
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_030620095.1
- Location
- JAUTXW010004349.1:587828-589511[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00042 0.11 15.9 5.3 1 23 53 75 53 75 0.98 2 13 0.00051 0.13 15.7 2.5 2 23 82 104 81 104 0.96 3 13 0.00014 0.034 17.5 1.9 1 23 110 132 110 132 0.97 4 13 0.0004 0.1 16.0 0.2 2 23 139 160 138 160 0.97 5 13 0.022 5.6 10.5 3.6 2 23 167 189 166 189 0.95 6 13 0.0017 0.43 14.0 4.3 1 23 197 219 197 219 0.97 7 13 0.0012 0.29 14.5 3.1 3 23 227 248 226 248 0.97 8 13 0.00019 0.049 17.0 0.2 1 23 253 275 253 275 0.96 9 13 0.045 11 9.5 1.6 2 12 286 296 286 305 0.82 10 13 0.001 0.26 14.7 1.3 1 23 312 334 312 334 0.98 11 13 1.6e-05 0.0042 20.3 1.1 1 23 340 362 340 362 0.98 12 13 4.3e-06 0.0011 22.2 2.9 1 23 370 392 370 392 0.98 13 13 0.0002 0.051 16.9 3.7 1 23 398 421 398 421 0.97
Sequence Information
- Coding Sequence
- ATGAATCATGTCAACGTCGAAGATATCATgaaaaggcctgtcaaatataaattaaaaatcaaagatAATAATGGTGTTTTGAAAGAAATCGACAAAGAGTGCCAAATAATTGGGAAAGATAATGAAACTATTATCGTGCAGAAGTCATTAGAAGGTTATCAGTGCCCTTACTGCGTTAGGTGCTTTCAGCAACGCTGCAAGCTTAAGAACCATATAATAATTCATAGTACAGATCGACCATGGAAGTGTCAAATATGTGACAAGACTTTCAAGCATAAACGGGTTTTGGATTACCACGAAAAAACCGTTCATGGGGAGCCTGAAAATTTTCCTTGCGACATTTGTGGGAAAATATTTAGCAATAAAAGAAATTGTGTTGTCCATCGTAACAGACACTCTAAACAATATACTGTAAAATGCGAAGAATGCGGCAAAGGGTTCCTAGGAAATTTCTATCTCAAAAAACATATGATCGTTCACAGCGACGAAAGACCTCTGCAGTGTATGGTTTGTAACAAACGCTTCAAGCACCAGCGAGTCTTGGACTACCATTTTAAGACTCTCCATAGTCAAGATAGTCAAGAAAAGTACCCTTGTGATATGTGCGGGAAGTTTTTCACAACCAAAAGAAACTGTGATGTTCATCGAAAGAGACATTTAAAGGAGTTTAGTGTTTTTTGTGAACATTGTGgtaaaggttttttaaataacttctacCTAAAGAAACACATAAACTCGAAGCACTACGGCAAAAGACATATCTGTGATGTATGCGGTGCTAGCATAGGAGATAAAGGAAACTTGAGAAACCATATGAAACTTCACGATCCAAATTATAAGAGGCCGCCTCCAGAAAAGTGTCATATATGCAATAAGACCTTTTCTGATATTAAACGACATTTTAAAGCAGCCCATGAAAATGACGGAAAAAACTATAAATGCGAATATTGCGAGAAATATTTCCGGGGTAAAGATGGTTTAAAGTTCCATCTGATGATCCATCGAGGAGAAAAACCGTTTTCATGTGAATTTTGCGGAAAAGCGTTTATTCTTAATACCTTCCTGCAACAACATCTACGGACTCATCCTGAAAGTAACGTAAAACCTTTCGAGTGCTTAACTTGCGGAaagacttttattaaaaaaagtttgttggaacatcacacaaacacacacacaggCGCAAGACCTTTCCATTGtgaattttgttcaaaaagtTTTACTGGTAGAAAGTATCTAACGGCGCATGTACGCAGTCAACATACTATTGGGCAAACTTAA
- Protein Sequence
- MNHVNVEDIMKRPVKYKLKIKDNNGVLKEIDKECQIIGKDNETIIVQKSLEGYQCPYCVRCFQQRCKLKNHIIIHSTDRPWKCQICDKTFKHKRVLDYHEKTVHGEPENFPCDICGKIFSNKRNCVVHRNRHSKQYTVKCEECGKGFLGNFYLKKHMIVHSDERPLQCMVCNKRFKHQRVLDYHFKTLHSQDSQEKYPCDMCGKFFTTKRNCDVHRKRHLKEFSVFCEHCGKGFLNNFYLKKHINSKHYGKRHICDVCGASIGDKGNLRNHMKLHDPNYKRPPPEKCHICNKTFSDIKRHFKAAHENDGKNYKCEYCEKYFRGKDGLKFHLMIHRGEKPFSCEFCGKAFILNTFLQQHLRTHPESNVKPFECLTCGKTFIKKSLLEHHTNTHTGARPFHCEFCSKSFTGRKYLTAHVRSQHTIGQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -