Kmac002627.1
Basic Information
- Insect
- Kuschelorhynchus macadamiae
- Gene Symbol
- -
- Assembly
- GCA_030620095.1
- Location
- JAUTXW010000077.1:94384-100411[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00018 0.046 17.1 1.6 1 23 430 452 430 452 0.96 2 18 0.0019 0.47 13.9 1.2 1 23 461 483 461 483 0.97 3 18 0.00066 0.17 15.3 0.9 1 23 492 514 492 514 0.97 4 18 0.002 0.51 13.8 1.5 1 23 523 545 523 545 0.96 5 18 0.011 2.7 11.5 4.7 1 23 554 576 554 576 0.97 6 18 0.0056 1.4 12.4 0.5 1 23 585 607 585 607 0.97 7 18 0.0011 0.29 14.6 0.8 1 23 616 638 616 638 0.97 8 18 0.0054 1.4 12.4 0.4 1 23 647 669 647 669 0.97 9 18 0.00035 0.089 16.2 2.0 1 23 678 700 678 700 0.98 10 18 0.017 4.4 10.8 0.5 1 23 709 731 709 731 0.97 11 18 0.0043 1.1 12.7 0.4 1 23 740 762 740 762 0.97 12 18 0.86 2.2e+02 5.5 1.8 1 23 771 793 771 793 0.95 13 18 0.0095 2.4 11.6 2.8 1 23 802 824 802 824 0.97 14 18 0.00037 0.094 16.1 1.1 1 23 834 856 834 856 0.96 15 18 0.0028 0.7 13.3 0.3 1 23 865 887 865 887 0.97 16 18 0.012 3 11.4 2.0 1 23 896 918 896 918 0.97 17 18 3e-05 0.0075 19.5 0.7 1 23 927 949 927 949 0.98 18 18 0.017 4.3 10.9 0.8 1 23 988 1010 988 1010 0.95
Sequence Information
- Coding Sequence
- ATGTCCAATGCAGAAACCGGAACTTATGAAGCTGATTCTATAAATAGTGACCCCAGAGATAAAGAATTCTCTACAGATTTTGATGATCTAGGCAAGAGTCAATACTCGTTTCGACCTGATACACCCGCTGCAGGTCCCTCTACTACCGATACTACCGATCAACAAACAGATATAAGCAGTCCAGTGAATCCATCGAGCCCAGCTCTTCCTATGAAACTACTCGGAAAACGGGTGAAAACAAGTTCTTGTAATACAAAAGGACTTAGTGCTGTGGATAAATGCGCAATTgattattttaatgcaaaaaagaaaaaagcagAAGCAGTAACTGGTTCACCACAGTTGAAACAAAGTTCTTGTGAGTTGTTTCTCTTAAGTCTTGTTCCTCAAATGGAATCCATGACTCCAAGGCAACAGCTTTCCTTTCAAAAAGGCATTCTGCAGTTAGTTGAAAACATCAAATATCCAGTACTATCGGTTCCTAATCAACAAAACCATGCACCAACTCCTGCAGGCTCGTATTACAATGCATTTCCTTTAGAATACGCAGAACAGCAGACCACTCACCTACAAGATCTTTCACCTACAGAGTCATCATATTCGAATACACATTCACAGCAAGTTGTTCACCTACAAGATGTGACACGTGCACAGTCATCATGTTCGCAGAAAATCATTCACCTACAGGATATTCCTCCTGCACAGTCTTCGCGTAGTCATTCGCAGCAGACGACTCACATACAAGATCTTACACCTGCACAGTCATCATGTGCGCGTACTCATCCGCAGCAAATCATTTACCTACAGGATGTTACTTCTGCAGAGTCACCGCATACACATTCGCAGCAAGTTGTTCACCTACAAGATCTTACACCTGCACAGTCATCATGTTCGCAAACACACCCGCAAATACAAGACAGAATTTTATATTCCAGAAAACTTGGCAAAGCGCATGGTCAACCATATTTTGATAAGGAGGATCATACGGAGGATATTGATGTTAAAAAAGAAGATGATGATGACTATTTCAACGAATCATGTTCTGTTAATCATGAGAAAATCAAAAGCGGTATTGAAGAAGACATTTCTGGGGATGAATTTGATAACGTGAACggtaaactaaatattaataaaggTGACCCTACAGAAGATATTGATGTTAAAAAGGAAGAGGATGACGAGGAATATTTCAATGAATCATACTCTATAAAACATGAGGAAGTCAACATCAAAAGTGATAATGAAGAGGAGATCGCCAAACCGACGCACATATTGAAAGTTAAGCCGCATAAATGTCCAGACTGTCCTTACAAATCAGCTGATAAGAGTAGCCTCAAAAGGCATTCGATTAGGCATAAACCAGATGAATATATACAGTATTACAAATGTCCAGAGTGTCCTTTCAAATCAGCTAAGAAGAGTTATCTTAAACAGCATTCGATCAGACATAAAGATCCAAatgaaattgtatggtatgaATGTCCAGACTGTCCTTACAAGTCAGCTAATAAAAATCACCTTAAAATACATTCGATTAGACATAAAAAGCCAAATGAAATTGTATGGCATAAATGTCCAGAATGCGCTTACCAAACAGCTAATAAGAGCGACCTCAAACGGCATTCGATCAGACATAAGCCGGGTGAAACAGTACAGTATTATAAGTGTGCGCAGTGTTCATACAAATCAAGTCAGAAGAGTCACCTCAAAACTCATTCGATCAGACATAAAAAGCCAAACGAAATTCTATGGTTTGAATGTCCTGAGTGTCCTTTCAAATCAGCCATTAAGAGTAGCCTTAAAAGGCATTCGCTCAAACACAAAAAGCCAAACGAAATTGCATGGTACGAATGTCCAGAGTGTCCGTACAAATCAATTCAAAAAGGTCACCTTAAAGATCATTCAATCAAACATAAAAAGACAGACGAAATTGTATGGTTTGAATGTCCAGATTGTCCTTTCAGATCAGCTAATAAGGGTCGCCTCAAGAAGCATTCGATCAGGCATAAAAAGCCAAATGAAGTTGCCTGGTATGAATGTCCCGAGTGTCCTTTCAAATCAGCTAATAAGAGTCACCTCAAACAGCATTCGAACAAACATAAGCCAGACGAAattgtacattattataaatGTCCAGACTGTCCTTTCAAATCTTCACTCAAGGGTAACATCAACAAACATTCGATCAGACATAAAAACCCAGATGACATTGTATGGTTTGAATGTCCGCAGTGTTCTTACACATCAGCTGATAAGAGTCGCCTCAAAGCCCACTCGATCAGACATAAAAAGACAAATGAAATTGTACAGTTTGAATGTTTACAGTGCGATTTTAAGAGTGCTTATAAGAGTGCCGTCAAAAAGCATTCATTCAGACATAAAAAGCGagatgaaattgtatggtatAAATGTTCAGAATGTCCTTACAAATCAACGCACAAGGGCAACATCAACAAGCATTCGATTAGACATAAAAAGCCAGATGAAATTGTGCAGTCTTATGATTGTACAGAGTGTCCTTACAAATCGACTGATAAGAGTAACCTCAAAACTCACTCGATCAGACATAAAAAGCCAAACGAAATTAATTGGTATGAATGTCCAGACTGCCCTTTTATGTCAGCTATGAAGAGTAGTCTTAAAACTCATTCGCTCAGGCACAAAAAGCCAGATGAAATTGAATGGTATGAATGTCTAGAATGTCCTTACAAATCGGCTAATAAAACTCACCTCAAAACTCATTCGATCAAACATAAAAAGCCCGATGAAATTGTATGGTTCGAATGTCCAGATTGTCCGTACAAATCGGCGCGAAAAAGTAATTTCAAACAGCATTTGATCAGACATAAAAAGCCCAGTGAAATTGTTTGGTATAAATGTTCCCAGTGCTTATATAAAACCAAATGGAAGCAGGATTTAGGAATCCATAAGCATAAACATGAAAGCACCACCGATGACTGGTACTTCTGTTTCTCGTGCCCTTATAAAACTGTCGATAAATCTTCTTTGGAAAAGCACGTCATACAGCACAACTGTACCacagtagaaataaactag
- Protein Sequence
- MSNAETGTYEADSINSDPRDKEFSTDFDDLGKSQYSFRPDTPAAGPSTTDTTDQQTDISSPVNPSSPALPMKLLGKRVKTSSCNTKGLSAVDKCAIDYFNAKKKKAEAVTGSPQLKQSSCELFLLSLVPQMESMTPRQQLSFQKGILQLVENIKYPVLSVPNQQNHAPTPAGSYYNAFPLEYAEQQTTHLQDLSPTESSYSNTHSQQVVHLQDVTRAQSSCSQKIIHLQDIPPAQSSRSHSQQTTHIQDLTPAQSSCARTHPQQIIYLQDVTSAESPHTHSQQVVHLQDLTPAQSSCSQTHPQIQDRILYSRKLGKAHGQPYFDKEDHTEDIDVKKEDDDDYFNESCSVNHEKIKSGIEEDISGDEFDNVNGKLNINKGDPTEDIDVKKEEDDEEYFNESYSIKHEEVNIKSDNEEEIAKPTHILKVKPHKCPDCPYKSADKSSLKRHSIRHKPDEYIQYYKCPECPFKSAKKSYLKQHSIRHKDPNEIVWYECPDCPYKSANKNHLKIHSIRHKKPNEIVWHKCPECAYQTANKSDLKRHSIRHKPGETVQYYKCAQCSYKSSQKSHLKTHSIRHKKPNEILWFECPECPFKSAIKSSLKRHSLKHKKPNEIAWYECPECPYKSIQKGHLKDHSIKHKKTDEIVWFECPDCPFRSANKGRLKKHSIRHKKPNEVAWYECPECPFKSANKSHLKQHSNKHKPDEIVHYYKCPDCPFKSSLKGNINKHSIRHKNPDDIVWFECPQCSYTSADKSRLKAHSIRHKKTNEIVQFECLQCDFKSAYKSAVKKHSFRHKKRDEIVWYKCSECPYKSTHKGNINKHSIRHKKPDEIVQSYDCTECPYKSTDKSNLKTHSIRHKKPNEINWYECPDCPFMSAMKSSLKTHSLRHKKPDEIEWYECLECPYKSANKTHLKTHSIKHKKPDEIVWFECPDCPYKSARKSNFKQHLIRHKKPSEIVWYKCSQCLYKTKWKQDLGIHKHKHESTTDDWYFCFSCPYKTVDKSSLEKHVIQHNCTTVEIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -