Kmac063653.1
Basic Information
- Insect
- Kuschelorhynchus macadamiae
- Gene Symbol
- zfh1
- Assembly
- GCA_030620095.1
- Location
- JAUTXW010002490.1:100438-122913[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.023 5.7 10.5 0.5 1 23 111 134 111 134 0.96 2 17 0.017 4.3 10.9 0.5 1 23 141 163 141 163 0.94 3 17 2.6 6.6e+02 4.0 4.2 1 23 167 191 167 191 0.89 4 17 0.016 4.1 10.9 0.4 3 23 199 219 198 219 0.97 5 17 0.0012 0.29 14.5 1.0 1 23 225 248 225 248 0.93 6 17 9.4e-06 0.0024 21.1 0.3 1 23 259 282 259 282 0.94 7 17 8.2e-06 0.0021 21.3 0.7 2 23 291 312 290 312 0.97 8 17 0.00019 0.049 17.0 1.7 1 23 318 340 318 340 0.95 9 17 0.23 58 7.3 1.1 3 23 438 456 436 456 0.85 10 17 0.0017 0.44 14.0 0.1 1 23 482 504 482 504 0.97 11 17 0.00026 0.067 16.5 1.3 1 23 509 531 509 531 0.98 12 17 0.00014 0.035 17.4 1.0 1 21 535 555 535 556 0.94 13 17 1.6 4.1e+02 4.6 5.4 1 14 563 576 563 585 0.74 14 17 0.001 0.26 14.7 3.3 1 23 591 614 591 614 0.96 15 17 0.00019 0.048 17.0 4.0 1 23 625 648 625 648 0.96 16 17 2.7e-05 0.0068 19.7 0.4 2 23 657 678 656 678 0.97 17 17 0.00034 0.085 16.2 1.5 1 23 684 707 684 707 0.96
Sequence Information
- Coding Sequence
- atgcagcttgATGTCCCACTTTTTAGCCCAAACGAGATTTATCTAAATTTGGATCAAGATGGCGAAGAGATCTGGATAGAAGTCATGGACGATAATAATGTAGAAATGCTAGCTGAAAGTGCTAAGGGTCTGGaagatgaattattaaaaaatacagaaggtattcaaataaaaatagaaaatctgGAAGATATTAAAAGCGATTCGGAAGACTCAAACTCACAAACGGAAAACTCGGTTTTCTCAAAGGAAGATGTAAATAAACGAATGTGTAATGCATGTGGCTGTTCTTTTAAATTTCTCGCCCGTCATTTAGAGACCCATGGACCATACAATTGCGTTGATTGTTTTATTCATTATCCAACCAAAGATCTACTTGACGAACACATTCGTGATTCTCATAGCAAAGACACGGAAATTTACACCTGTGAGATATGCAACTTGGGTTTTTCTTCTTTGACAAAATTGGGTATTCACAACTATAAACATACACAGACATACAGCTGTCCATTATGCAAGTTCACCGTGAAAGGGAAACACAAATATTCTTTGGTTAATCATATAAAGAGACACGAAGGACAGTATTCCGTATTTTGTGATATTTGTGGGCAAGGATTTATTGAGAAGCATATTTTGACCACTCACATGGAGATACACGAAGCCATTCCCAAATATGTGTGTGAGGTTTGCAACAAGAAGTTTACTGTCAAAAGatatctgGACGTTCACAAGAGTTTGAATCACAAGAAAGAACTATATGGCATTGAGGAAATGTTTCAGTGCGAAGTCTGTGGGCGAAGTTTTACATTCGAAAAAAGTCTGATCAGGCATTTGAGCGCCATACATAAAGTCGGAGAGGACAGAACAGTGGAGTGTCCGGTATGCAAGAAAATAATAGCAAACAATCATAACCTCAAAAAGCACATGCGAGTTCATACGGGCGAGAAGCGGTTCTGTTGTGACTCTTGTGGTAAAGCGTTCGCAGAgaaaaaatatctacaaaaaCATCAAGCTGGTCATGAGAGGGAAAAAGAGCGAAAGCGCAAGTCCGAAGAAGAATTTCGAGCAAAAACTAAGGTTAAGCAGGAAAAATTTCAGCAGTATTTGATTTATCAAGACAGTGACGATGATAGTGGGGGCGGTCTGGCTAATGTTCTGTATTTCGCGTTGCAAACATTTGAGCCCCAGTTATACTTGGTAAAAACCGAAAGAGGAATACAAGTAATTTTCGATACCGTGCCTCCAGCAATTCAAAAGGAAGTCATTGTCGACTCGAATGCTTCCGCTAACAAATCTCCACAACCAAAAGAATGCATTGAATGTGGAAAATCTTTCAGAAATCTGGATCGACATATGAGGCTGAAGCATCGAAAACAAAGTCCGACTCTTTGCTCAACTTGCGGAAAACTTGTCCGCAACATAAGCCAACATCATCACAAAGAATACGCTTGCAATATATGCTTTGCTGGTTTTAAATCCAACGAGATGTTGGCTGAGCACAGACAGATTCATTTCAGTGACCATTACAAATGTGATCAGTGTCCTTTAGTTTTCAGGACTCTAACTGAGCTAGCTCTTCATCACTATACCCATTCAAGTATTTATATGTGTCCAAAGTGTAGTATGACGTTTAAGACGAGGCAGAATTTAAAATACCACGTATCAACCGAAGAAAAGAATTATAAATATAGTTGCCACATTTGCGGAAAAGGTTTTGTTCTACATCACGTTTATCAGTGCCATGTTGAGAGACACGAGAACAGCATGAAGTACGAGTGTCAAATTTGTCACAAGAAATTTaacttaaagatatatttaaagaGCCATGAAAGGCTGAATCATAAAAAGGAGCTGTTTGGCGTTGAACAGGTTTTTCAGTGCGAGTATTGTTCCAGGACTTTTTCCTTTGAGTGTTCCCTCAAACGGCATTTGAATTTAGTGCACAAAGTCGGAGGAGAGAAAAGAGTTCAGTGTAATATATGTTCGAAAGTGTTAACTACTACGTATAGCCTCACAGTTCACATGAGATTGCATACTGGTGAGAAAAAATTCGAGTGTTCTTTTTGTGGAGAAAAATTTTCTAGAACGCAGTACGTCACCAGACACATAGCCCGTAAGCATGGATTGGAGAAAAATGCGTCTTCGTAA
- Protein Sequence
- MQLDVPLFSPNEIYLNLDQDGEEIWIEVMDDNNVEMLAESAKGLEDELLKNTEGIQIKIENLEDIKSDSEDSNSQTENSVFSKEDVNKRMCNACGCSFKFLARHLETHGPYNCVDCFIHYPTKDLLDEHIRDSHSKDTEIYTCEICNLGFSSLTKLGIHNYKHTQTYSCPLCKFTVKGKHKYSLVNHIKRHEGQYSVFCDICGQGFIEKHILTTHMEIHEAIPKYVCEVCNKKFTVKRYLDVHKSLNHKKELYGIEEMFQCEVCGRSFTFEKSLIRHLSAIHKVGEDRTVECPVCKKIIANNHNLKKHMRVHTGEKRFCCDSCGKAFAEKKYLQKHQAGHEREKERKRKSEEEFRAKTKVKQEKFQQYLIYQDSDDDSGGGLANVLYFALQTFEPQLYLVKTERGIQVIFDTVPPAIQKEVIVDSNASANKSPQPKECIECGKSFRNLDRHMRLKHRKQSPTLCSTCGKLVRNISQHHHKEYACNICFAGFKSNEMLAEHRQIHFSDHYKCDQCPLVFRTLTELALHHYTHSSIYMCPKCSMTFKTRQNLKYHVSTEEKNYKYSCHICGKGFVLHHVYQCHVERHENSMKYECQICHKKFNLKIYLKSHERLNHKKELFGVEQVFQCEYCSRTFSFECSLKRHLNLVHKVGGEKRVQCNICSKVLTTTYSLTVHMRLHTGEKKFECSFCGEKFSRTQYVTRHIARKHGLEKNASS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -