Kmac037052.1
Basic Information
- Insect
- Kuschelorhynchus macadamiae
- Gene Symbol
- -
- Assembly
- GCA_030620095.1
- Location
- JAUTXW010001143.1:518955-533432[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00017 0.042 17.2 0.1 2 22 146 166 145 166 0.96 2 12 0.00015 0.037 17.4 0.6 2 21 193 212 192 213 0.95 3 12 5.8e-06 0.0015 21.8 4.9 1 23 222 244 222 244 0.99 4 12 1.1e-06 0.00028 24.0 2.7 1 23 250 272 250 272 0.98 5 12 1.7e-06 0.00044 23.4 0.7 1 23 278 300 278 300 0.98 6 12 0.0049 1.2 12.6 2.4 1 23 306 328 306 328 0.93 7 12 1.9e-05 0.0048 20.2 0.1 2 23 348 369 347 369 0.95 8 12 1.4e-06 0.00035 23.7 1.6 1 23 378 400 378 400 0.96 9 12 0.00076 0.19 15.1 3.1 1 23 406 428 406 428 0.96 10 12 7.6e-07 0.00019 24.6 2.3 1 23 434 456 434 456 0.99 11 12 8.3e-07 0.00021 24.4 1.6 1 23 462 484 462 484 0.97 12 12 0.00046 0.12 15.8 2.7 1 23 490 512 490 512 0.97
Sequence Information
- Coding Sequence
- ATGAGCCAATTAACTATTAAAGATTTTCCTCTAATTTGCCGATTTTGCTCTGAACAAACCAAAGTAATGAAAATCATTTCAGATGTTCCTTAtgttgatatttttgcaaaaattactgGAATAAAGAGCAATAATGACTTGCCTCAGAATATTTGTTTATCTTGTGTGCAAATATTTGAGGAGTTTCTGAAGTTTATTGAAAAGTCTAGAGCAAATATTGAGAAACTAGCCATTATTTACTCAGCGGCATGCCAGGAAATTAAGTTTGAGAACTCTGATAATGAAGGATATGACTATGGATATGACAGATGCAAAGAACAAGATGTTATGAAAGAAACTAAGACTGACTTTGAGGAGGAGTATAATATCAAAGCCACTAGCCAAGATACCAGAGaaaagaattcaaaaattaatttaaacaaaacaaccAACATTACATGTCAAAAATGTTGGAAGAAATTTCCAGATGCAGAATTATTAACAGAACACATTAGAAcagaaaaatgcattaaaacagaCCATTCAACAAGACACATGGGACGTAACAAAAGACTTAAGaattgtatctcaaaagttaaatgcaaaaaatgtaaagttacatttaaaacaaaagctGATTTGTCTAATCACATCAAAGAAGGTTTTACTTGCCTGGTATTAGATTATAAATGTACagaatgtaataaaattttcaaaaagcagCACAGATTAATCAACCATATGAGAAGTCATACTAAAGAAGCACCTTTTGAGTGTACTGAATGCAAAAAAACATTTAgatttcaacaaaatttaaagagGCATCTTTTAATTCATAGTGGTGTAAAGAAATATAAATGTGAGGAGTGTGGAAAAGCATTTTCCAGAGCTCACGTCTTAAATGAACACAGAAACATCCACAGTGGCAACAATCCCTATATATGTGATTATTGTGGAAAAGGATTCAAAAGGTATGCCAACCATTTTATCCATGTGTATCGCCATAAAATACTGAATGGAGAAGTTGATCAAAGTGAGGACAAAAAGTTGTATTTACAATTACAGTGCAATATTTGCAATAAAGTTTTTGCTAGCAGGGGTGGATTAGAAAATCATTTAACATTACATGACGAgaaacctagagaaaaaaagttctTGTGTACAGAATGTGGGAAAGgtTTCAGTACACACGCACAATTGGACTCCCACATGAGAACACACACAGATGATAGACCATTTGAATGTGAACAGTGTGGTAAAAAGTTCAAGCAGAAAAGTGCTCATAATAACCACAAGCTTGTGCATTCTGGGGAGAGGCCCTATCAGTGCAAATCATGTGGACGATTGTTTACTCAATCTGGCCATCTAAAAGTTCACATGAGGGTGCATAGTGGAGAAAAACCATTTGcttgtaatttttgtggaaaaaaatttgctttaaaaagcaatttaaagGTTCATACAAGAACTCACACTGGTGAAAAACCATATGTATGCTCACTTTGTAACAAAGGATATCATGATTCAACGAGTTTGAAGAAACATACGAAGGCTCATGGTTTAGGTAAACTCAGCCATGAACATATAGAGCCAAAAAGCGAGAATTTACAGACTATGTATTGTTCTGATGTAGATCATACTAAAAAAGATATATTGTCAGAAAATCATGTTacataa
- Protein Sequence
- MSQLTIKDFPLICRFCSEQTKVMKIISDVPYVDIFAKITGIKSNNDLPQNICLSCVQIFEEFLKFIEKSRANIEKLAIIYSAACQEIKFENSDNEGYDYGYDRCKEQDVMKETKTDFEEEYNIKATSQDTREKNSKINLNKTTNITCQKCWKKFPDAELLTEHIRTEKCIKTDHSTRHMGRNKRLKNCISKVKCKKCKVTFKTKADLSNHIKEGFTCLVLDYKCTECNKIFKKQHRLINHMRSHTKEAPFECTECKKTFRFQQNLKRHLLIHSGVKKYKCEECGKAFSRAHVLNEHRNIHSGNNPYICDYCGKGFKRYANHFIHVYRHKILNGEVDQSEDKKLYLQLQCNICNKVFASRGGLENHLTLHDEKPREKKFLCTECGKGFSTHAQLDSHMRTHTDDRPFECEQCGKKFKQKSAHNNHKLVHSGERPYQCKSCGRLFTQSGHLKVHMRVHSGEKPFACNFCGKKFALKSNLKVHTRTHTGEKPYVCSLCNKGYHDSTSLKKHTKAHGLGKLSHEHIEPKSENLQTMYCSDVDHTKKDILSENHVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -